MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:60.7 nTPM
HPA Brain:32.9 nTPM
GTEx:60.7 nTPM
FANTOM5:20.7 Scaled Tags Per Million
Pig:81.9 nTPM
Mouse:78.8 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.3
2019 Male, age 18, unknown 36.4
2411 Female, age 72, unknown 34.9
2666 Male, age 74, left hemisphere 34.5
1830 Male, age 51, unknown 32.6
2828 Female, age 72, unknown 32.5
1870 Female, age 42, unknown 32.2
1833 Male, age 53, unknown 29.9
1827 Male, age 72, unknown 29.0
2586 Male, age 75, left hemisphere 25.7
2219 Male, age 76, both hemispheres 25.6
Dorsal raphe nucleus
nTPM: 31.6
1828 Male, age 53, unknown 33.8
2047 Male, age 72, unknown 31.6
2298 Female, age 72, unknown 31.5
2750 Male, age 76, both hemispheres 31.5
2016 Female, age 72, unknown 29.7
Inferior colliculus
nTPM: 27.3
2849 Male, age 72, unknown 29.0
1890 Male, age 53, unknown 28.4
2097 Female, age 72, unknown 26.8
1848 Female, age 42, unknown 25.0
Median raphe nucleus
nTPM: 27.4
2220 Male, age 76, midline 27.4
Periaquaductal grey, anterior
nTPM: 31.3
2502 Female, age 75, unknown 35.6
1795 Male, age 51, unknown 29.7
1947 Male, age 18, unknown 28.6
Periaquaductal grey, dorsal
nTPM: 25.3
1831 Male, age 72, unknown 29.0
2850 Male, age 76, both hemispheres 28.4
2464 Female, age 72, unknown 27.1
1840 Male, age 53, unknown 16.8
Periaquaductal grey, lateral
nTPM: 27.2
2272 Male, age 74, both hemispheres 31.4
2140 Male, age 76, both hemispheres 27.5
2053 Male, age 18, unknown 22.8
Pretectal area
nTPM: 29.8
1817 Female, age 42, unknown 37.2
2667 Female, age 75, unknown 34.7
1815 Male, age 53, unknown 34.3
2273 Male, age 74, both hemispheres 32.6
1816 Male, age 51, unknown 29.7
2007 Male, age 72, unknown 29.0
2825 Male, age 18, unknown 28.5
2316 Male, age 76, right hemisphere 27.3
2224 Female, age 72, unknown 26.6
1944 Female, age 72, unknown 24.9
2407 Male, age 75, both hemispheres 23.3
Red nucleus
nTPM: 32.9
1821 Female, age 72, unknown 39.4
2785 Male, age 18, unknown 36.8
1954 Female, age 42, unknown 35.8
2503 Female, age 72, unknown 35.6
1904 Male, age 53, unknown 35.2
2823 Male, age 76, right hemisphere 34.7
1865 Male, age 51, unknown 34.6
2588 Male, age 74, left hemisphere 32.2
2227 Male, age 72, unknown 29.0
2769 Male, age 72, unknown 29.0
2725 Female, age 75, unknown 26.9
2584 Male, age 75, left hemisphere 25.7
Substantia nigra
nTPM: 30.5
2409 Female, age 72, unknown 36.4
2241 Male, age 72, unknown 34.6
1851 Male, age 51, unknown 32.3
1916 Female, age 42, unknown 30.9
2699 Male, age 18, unknown 30.6
1941 Male, age 53, unknown 29.9
2665 Male, age 74, both hemispheres 29.7
1889 Female, age 72, unknown 27.3
2583 Male, age 75, right hemisphere 27.1
2590 Female, age 75, unknown 26.7
Superior colliculus
nTPM: 29.7
2587 Male, age 74, left hemisphere 33.5
1913 Female, age 42, unknown 32.5
1796 Male, age 53, unknown 31.2
2668 Female, age 75, unknown 30.5
2087 Female, age 72, unknown 30.1
2261 Male, age 18, unknown 29.8
1839 Male, age 51, unknown 29.6
1995 Male, age 72, unknown 29.0
1895 Male, age 76, right hemisphere 26.0
2664 Male, age 75, both hemispheres 24.9
Ventral tegmental area
nTPM: 31.9
2410 Female, age 72, unknown 36.0
2223 Female, age 72, unknown 35.1
2021 Male, age 53, unknown 33.4
2218 Male, age 76, both hemispheres 29.4
1915 Female, age 42, unknown 29.1
1942 Male, age 51, unknown 28.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 60.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.7
Samples: 139

Max nTPM: 116.0
Min nTPM: 39.6
Std nTPM: 11.5
Median nTPM: 58.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 116.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 98.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 93.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 92.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 87.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 85.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 83.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 80.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 80.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 78.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 78.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.7
FF:10158-103A5 76 years, female 20.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 81.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 77.4
Samples: 4

Max nTPM: 86.5
Min nTPM: 64.8
Sample A Female 84.7
Sample B Female 64.8
Sample C Male 73.6
Sample D Male 86.5
Midbrain
nTPM: 81.9
Samples: 4

Max nTPM: 117.9
Min nTPM: 64.5
Sample A Female 117.9
Sample B Female 76.1
Sample C Male 69.1
Sample D Male 64.5
Periaqueductal gray
nTPM: 67.4
Samples: 3

Max nTPM: 70.0
Min nTPM: 65.4
Sample B Female 65.4
Sample C Male 70.0
Sample D Male 66.8
Superior colliculi
nTPM: 76.6
Samples: 4

Max nTPM: 84.9
Min nTPM: 64.5
Sample A Female 84.9
Sample B Female 64.5
Sample C Male 75.8
Sample D Male 81.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 78.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 78.8
Samples: 4

Max nTPM: 85.5
Min nTPM: 70.9
Sample A Male 85.4
Sample B Male 70.9
Sample C Female 73.5
Sample D Female 85.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
69080047 Antisense, RP_050324_01_F10, Mouse strain C57BL/6J (56 days, male) 1.9

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