MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.3 nTPM
HPA Brain:14.6 nTPM
GTEx:63.3 nTPM
FANTOM5:126.7 Scaled Tags Per Million
Pig:50.0 nTPM
Mouse:11.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.9
1830 Male, age 51, unknown 8.9
2019 Male, age 18, unknown 8.8
2828 Female, age 72, unknown 8.6
1870 Female, age 42, unknown 8.5
2411 Female, age 72, unknown 8.1
1833 Male, age 53, unknown 7.2
1827 Male, age 72, unknown 5.8
2219 Male, age 76, both hemispheres 5.5
2666 Male, age 74, left hemisphere 5.0
2586 Male, age 75, left hemisphere 2.5
Dorsal raphe nucleus
nTPM: 12.1
2298 Female, age 72, unknown 20.5
2016 Female, age 72, unknown 13.7
2750 Male, age 76, both hemispheres 10.3
1828 Male, age 53, unknown 8.7
2047 Male, age 72, unknown 7.1
Inferior colliculus
nTPM: 8.9
2097 Female, age 72, unknown 12.3
1890 Male, age 53, unknown 8.8
2849 Male, age 72, unknown 7.4
1848 Female, age 42, unknown 7.0
Median raphe nucleus
nTPM: 8.5
2220 Male, age 76, midline 8.5
Periaquaductal grey, anterior
nTPM: 6.1
1795 Male, age 51, unknown 9.1
1947 Male, age 18, unknown 5.4
2502 Female, age 75, unknown 3.9
Periaquaductal grey, dorsal
nTPM: 9.8
1831 Male, age 72, unknown 13.6
2850 Male, age 76, both hemispheres 9.9
1840 Male, age 53, unknown 9.4
2464 Female, age 72, unknown 6.4
Periaquaductal grey, lateral
nTPM: 10.7
2272 Male, age 74, both hemispheres 13.6
2053 Male, age 18, unknown 9.7
2140 Male, age 76, both hemispheres 8.9
Pretectal area
nTPM: 9.9
2273 Male, age 74, both hemispheres 15.9
2224 Female, age 72, unknown 13.9
2316 Male, age 76, right hemisphere 13.9
2407 Male, age 75, both hemispheres 11.1
1944 Female, age 72, unknown 10.9
1817 Female, age 42, unknown 10.6
1815 Male, age 53, unknown 10.1
2825 Male, age 18, unknown 7.4
2007 Male, age 72, unknown 7.3
1816 Male, age 51, unknown 3.6
2667 Female, age 75, unknown 3.6
Red nucleus
nTPM: 9.4
2725 Female, age 75, unknown 21.5
1865 Male, age 51, unknown 13.6
2503 Female, age 72, unknown 12.7
2823 Male, age 76, right hemisphere 10.1
1904 Male, age 53, unknown 9.3
2769 Male, age 72, unknown 9.0
2227 Male, age 72, unknown 8.5
1821 Female, age 72, unknown 8.3
2785 Male, age 18, unknown 7.2
1954 Female, age 42, unknown 6.7
2584 Male, age 75, left hemisphere 4.1
2588 Male, age 74, left hemisphere 1.4
Substantia nigra
nTPM: 14.6
2590 Female, age 75, unknown 34.4
2699 Male, age 18, unknown 22.0
2665 Male, age 74, both hemispheres 18.7
1916 Female, age 42, unknown 12.3
2241 Male, age 72, unknown 12.0
1851 Male, age 51, unknown 11.4
1941 Male, age 53, unknown 11.2
1889 Female, age 72, unknown 9.1
2583 Male, age 75, right hemisphere 7.5
2409 Female, age 72, unknown 7.4
Superior colliculus
nTPM: 8.7
1913 Female, age 42, unknown 17.7
2587 Male, age 74, left hemisphere 14.6
1995 Male, age 72, unknown 13.2
2087 Female, age 72, unknown 8.5
1796 Male, age 53, unknown 6.3
1895 Male, age 76, right hemisphere 6.1
1839 Male, age 51, unknown 6.0
2664 Male, age 75, both hemispheres 6.0
2261 Male, age 18, unknown 5.4
2668 Female, age 75, unknown 3.3
Ventral tegmental area
nTPM: 10.6
2021 Male, age 53, unknown 13.6
1915 Female, age 42, unknown 13.3
1942 Male, age 51, unknown 10.3
2218 Male, age 76, both hemispheres 10.3
2410 Female, age 72, unknown 9.7
2223 Female, age 72, unknown 6.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.3
Samples: 139

Max nTPM: 307.0
Min nTPM: 6.2
Std nTPM: 57.0
Median nTPM: 44.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 307.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 274.9
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 270.7
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 225.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 214.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 194.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 188.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 174.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 164.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 164.8
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 141.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.7
FF:10158-103A5 76 years, female 126.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 43.7
Samples: 4

Max nTPM: 45.9
Min nTPM: 40.1
Sample A Female 40.1
Sample B Female 45.9
Sample C Male 43.3
Sample D Male 45.6
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 56.6
Min nTPM: 29.8
Sample A Female 29.8
Sample B Female 56.6
Sample C Male 32.0
Sample D Male 34.4
Periaqueductal gray
nTPM: 50.0
Samples: 3

Max nTPM: 52.4
Min nTPM: 45.3
Sample B Female 52.4
Sample C Male 52.3
Sample D Male 45.3
Superior colliculi
nTPM: 33.6
Samples: 4

Max nTPM: 38.4
Min nTPM: 27.1
Sample A Female 30.7
Sample B Female 27.1
Sample C Male 38.2
Sample D Male 38.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.2
Samples: 4

Max nTPM: 14.1
Min nTPM: 9.1
Sample A Male 12.3
Sample B Male 14.1
Sample C Female 9.4
Sample D Female 9.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
72081677 Antisense, RP_051012_04_H10, Mouse strain C57BL/6J (56 days, male) 0.1
75080249 Antisense, RP_060412_06_H07, Mouse strain C57BL/6J (56 days, male) 0.1

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