MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.4 nTPM
HPA Brain:44.4 nTPM
GTEx:8.4 nTPM
FANTOM5:4.6 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.4
2666 Male, age 74, left hemisphere 54.1
2586 Male, age 75, left hemisphere 53.0
2219 Male, age 76, both hemispheres 52.2
1830 Male, age 51, unknown 45.2
1833 Male, age 53, unknown 41.5
1827 Male, age 72, unknown 41.3
2828 Female, age 72, unknown 40.7
2411 Female, age 72, unknown 40.5
2019 Male, age 18, unknown 40.3
1870 Female, age 42, unknown 35.5
Dorsal raphe nucleus
nTPM: 38.2
2047 Male, age 72, unknown 44.0
2750 Male, age 76, both hemispheres 39.2
1828 Male, age 53, unknown 37.9
2016 Female, age 72, unknown 36.2
2298 Female, age 72, unknown 33.5
Inferior colliculus
nTPM: 38.5
2849 Male, age 72, unknown 41.4
1890 Male, age 53, unknown 40.4
1848 Female, age 42, unknown 37.1
2097 Female, age 72, unknown 35.0
Median raphe nucleus
nTPM: 43.4
2220 Male, age 76, midline 43.4
Periaquaductal grey, anterior
nTPM: 40.6
1947 Male, age 18, unknown 41.0
2502 Female, age 75, unknown 40.9
1795 Male, age 51, unknown 39.9
Periaquaductal grey, dorsal
nTPM: 42.3
1831 Male, age 72, unknown 44.6
2464 Female, age 72, unknown 44.2
1840 Male, age 53, unknown 41.7
2850 Male, age 76, both hemispheres 38.7
Periaquaductal grey, lateral
nTPM: 40.2
2140 Male, age 76, both hemispheres 44.5
2053 Male, age 18, unknown 41.6
2272 Male, age 74, both hemispheres 34.6
Pretectal area
nTPM: 41.2
2407 Male, age 75, both hemispheres 51.0
2667 Female, age 75, unknown 47.9
2316 Male, age 76, right hemisphere 47.2
2825 Male, age 18, unknown 45.1
1815 Male, age 53, unknown 41.3
1816 Male, age 51, unknown 40.5
2224 Female, age 72, unknown 38.7
1944 Female, age 72, unknown 38.5
2007 Male, age 72, unknown 36.7
1817 Female, age 42, unknown 33.4
2273 Male, age 74, both hemispheres 32.3
Red nucleus
nTPM: 41.8
2584 Male, age 75, left hemisphere 54.8
2588 Male, age 74, left hemisphere 50.8
2823 Male, age 76, right hemisphere 50.5
1865 Male, age 51, unknown 44.5
1904 Male, age 53, unknown 42.7
1954 Female, age 42, unknown 39.2
2769 Male, age 72, unknown 38.1
2725 Female, age 75, unknown 38.0
2227 Male, age 72, unknown 37.6
2785 Male, age 18, unknown 36.2
2503 Female, age 72, unknown 35.9
1821 Female, age 72, unknown 33.7
Substantia nigra
nTPM: 39.8
2583 Male, age 75, right hemisphere 47.8
2241 Male, age 72, unknown 46.2
2699 Male, age 18, unknown 40.9
2665 Male, age 74, both hemispheres 40.5
1941 Male, age 53, unknown 39.5
1916 Female, age 42, unknown 38.8
1851 Male, age 51, unknown 38.1
2590 Female, age 75, unknown 37.2
1889 Female, age 72, unknown 35.1
2409 Female, age 72, unknown 33.8
Superior colliculus
nTPM: 42.1
2664 Male, age 75, both hemispheres 54.0
2087 Female, age 72, unknown 43.7
1895 Male, age 76, right hemisphere 43.5
2261 Male, age 18, unknown 43.3
2587 Male, age 74, left hemisphere 41.1
2668 Female, age 75, unknown 40.9
1913 Female, age 42, unknown 39.1
1995 Male, age 72, unknown 38.4
1796 Male, age 53, unknown 38.3
1839 Male, age 51, unknown 38.3
Ventral tegmental area
nTPM: 39.3
2218 Male, age 76, both hemispheres 44.1
2021 Male, age 53, unknown 41.9
1942 Male, age 51, unknown 41.1
2410 Female, age 72, unknown 37.8
2223 Female, age 72, unknown 36.7
1915 Female, age 42, unknown 34.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.4
Samples: 139

Max nTPM: 13.1
Min nTPM: 3.9
Std nTPM: 2.0
Median nTPM: 8.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 13.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 13.1
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 12.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 12.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 12.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 12.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 12.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 12.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 11.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 11.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 11.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.6
FF:10158-103A5 76 years, female 4.6

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