MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.5 nTPM
HPA Brain:14.9 nTPM
GTEx:26.5 nTPM
FANTOM5:31.7 Scaled Tags Per Million
Pig:42.4 nTPM
Mouse:72.1 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.9
2666 Male, age 74, left hemisphere 30.6
2411 Female, age 72, unknown 17.2
1827 Male, age 72, unknown 11.4
2019 Male, age 18, unknown 11.2
2586 Male, age 75, left hemisphere 11.1
2828 Female, age 72, unknown 10.3
1830 Male, age 51, unknown 8.1
2219 Male, age 76, both hemispheres 7.8
1833 Male, age 53, unknown 6.0
1870 Female, age 42, unknown 5.2
Dorsal raphe nucleus
nTPM: 10.9
2298 Female, age 72, unknown 16.3
1828 Male, age 53, unknown 12.0
2047 Male, age 72, unknown 9.7
2016 Female, age 72, unknown 9.3
2750 Male, age 76, both hemispheres 7.0
Inferior colliculus
nTPM: 10.5
1848 Female, age 42, unknown 14.4
2849 Male, age 72, unknown 11.3
2097 Female, age 72, unknown 8.2
1890 Male, age 53, unknown 7.9
Median raphe nucleus
nTPM: 8.5
2220 Male, age 76, midline 8.5
Periaquaductal grey, anterior
nTPM: 11.5
1795 Male, age 51, unknown 11.6
2502 Female, age 75, unknown 11.6
1947 Male, age 18, unknown 11.2
Periaquaductal grey, dorsal
nTPM: 8.3
1831 Male, age 72, unknown 10.0
2850 Male, age 76, both hemispheres 8.8
2464 Female, age 72, unknown 7.5
1840 Male, age 53, unknown 6.8
Periaquaductal grey, lateral
nTPM: 8.2
2053 Male, age 18, unknown 9.3
2140 Male, age 76, both hemispheres 7.9
2272 Male, age 74, both hemispheres 7.3
Pretectal area
nTPM: 11.9
2273 Male, age 74, both hemispheres 21.0
1817 Female, age 42, unknown 20.7
1816 Male, age 51, unknown 17.0
1944 Female, age 72, unknown 13.7
2007 Male, age 72, unknown 12.4
1815 Male, age 53, unknown 11.3
2825 Male, age 18, unknown 9.9
2667 Female, age 75, unknown 9.3
2316 Male, age 76, right hemisphere 6.9
2407 Male, age 75, both hemispheres 6.2
2224 Female, age 72, unknown 2.5
Red nucleus
nTPM: 8.0
2503 Female, age 72, unknown 15.4
1821 Female, age 72, unknown 10.5
2785 Male, age 18, unknown 10.0
2725 Female, age 75, unknown 9.6
2227 Male, age 72, unknown 8.1
1865 Male, age 51, unknown 8.0
2769 Male, age 72, unknown 7.9
2823 Male, age 76, right hemisphere 7.3
1954 Female, age 42, unknown 6.0
2584 Male, age 75, left hemisphere 5.5
1904 Male, age 53, unknown 4.1
2588 Male, age 74, left hemisphere 4.1
Substantia nigra
nTPM: 9.0
2409 Female, age 72, unknown 15.2
1941 Male, age 53, unknown 13.4
1889 Female, age 72, unknown 12.1
2590 Female, age 75, unknown 9.9
1851 Male, age 51, unknown 9.4
2699 Male, age 18, unknown 7.7
2241 Male, age 72, unknown 7.4
2665 Male, age 74, both hemispheres 5.3
2583 Male, age 75, right hemisphere 4.8
1916 Female, age 42, unknown 4.7
Superior colliculus
nTPM: 14.9
2664 Male, age 75, both hemispheres 36.1
2587 Male, age 74, left hemisphere 27.1
1796 Male, age 53, unknown 16.8
1839 Male, age 51, unknown 11.4
2087 Female, age 72, unknown 11.3
1895 Male, age 76, right hemisphere 10.0
2668 Female, age 75, unknown 10.0
2261 Male, age 18, unknown 9.7
1913 Female, age 42, unknown 8.5
1995 Male, age 72, unknown 8.4
Ventral tegmental area
nTPM: 12.7
2021 Male, age 53, unknown 21.2
2410 Female, age 72, unknown 19.1
1915 Female, age 42, unknown 11.4
1942 Male, age 51, unknown 9.0
2223 Female, age 72, unknown 7.8
2218 Male, age 76, both hemispheres 7.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.5
Samples: 139

Max nTPM: 41.4
Min nTPM: 18.0
Std nTPM: 5.2
Median nTPM: 25.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 41.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 41.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 40.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 39.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 39.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 38.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 38.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 36.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 36.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 36.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 36.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.7
FF:10158-103A5 76 years, female 31.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.7
Samples: 4

Max nTPM: 39.2
Min nTPM: 31.8
Sample A Female 38.8
Sample B Female 31.8
Sample C Male 39.2
Sample D Male 33.1
Midbrain
nTPM: 42.4
Samples: 4

Max nTPM: 48.3
Min nTPM: 35.0
Sample A Female 44.7
Sample B Female 35.0
Sample C Male 48.3
Sample D Male 41.5
Periaqueductal gray
nTPM: 35.3
Samples: 3

Max nTPM: 40.6
Min nTPM: 32.4
Sample B Female 32.8
Sample C Male 40.6
Sample D Male 32.4
Superior colliculi
nTPM: 42.4
Samples: 4

Max nTPM: 44.3
Min nTPM: 39.8
Sample A Female 44.3
Sample B Female 39.8
Sample C Male 43.6
Sample D Male 42.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.1
Samples: 4

Max nTPM: 74.4
Min nTPM: 69.4
Sample A Male 74.4
Sample B Male 69.4
Sample C Female 71.9
Sample D Female 72.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
392922 Antisense, RP_040804_01_H01, Mouse strain C57BL/6J (56 days, male) 4.3
70918922 Antisense, RP_050712_04_G08, Mouse strain C57BL/6J (56 days, male) 0.9

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