MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:289.6 nTPM
HPA Brain:11.9 nTPM
GTEx:289.6 nTPM
FANTOM5:683.5 Scaled Tags Per Million
Pig:342.4 nTPM
Mouse:363.4 nTPM
Allen mouse:9.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.5
2411 Female, age 72, unknown 25.3
2019 Male, age 18, unknown 24.7
1830 Male, age 51, unknown 12.1
1833 Male, age 53, unknown 10.2
1827 Male, age 72, unknown 9.2
1870 Female, age 42, unknown 7.9
2586 Male, age 75, left hemisphere 5.3
2828 Female, age 72, unknown 5.0
2666 Male, age 74, left hemisphere 4.9
2219 Male, age 76, both hemispheres 0.0
Dorsal raphe nucleus
nTPM: 10.4
2750 Male, age 76, both hemispheres 16.5
2016 Female, age 72, unknown 13.2
1828 Male, age 53, unknown 8.7
2298 Female, age 72, unknown 8.2
2047 Male, age 72, unknown 5.2
Inferior colliculus
nTPM: 5.1
2097 Female, age 72, unknown 9.0
1890 Male, age 53, unknown 6.0
1848 Female, age 42, unknown 3.0
2849 Male, age 72, unknown 2.3
Median raphe nucleus
nTPM: 1.5
2220 Male, age 76, midline 1.5
Periaquaductal grey, anterior
nTPM: 4.5
2502 Female, age 75, unknown 6.9
1947 Male, age 18, unknown 3.9
1795 Male, age 51, unknown 2.7
Periaquaductal grey, dorsal
nTPM: 1.9
2464 Female, age 72, unknown 3.7
1831 Male, age 72, unknown 2.3
2850 Male, age 76, both hemispheres 1.4
1840 Male, age 53, unknown 0.0
Periaquaductal grey, lateral
nTPM: 3.9
2053 Male, age 18, unknown 4.6
2272 Male, age 74, both hemispheres 4.4
2140 Male, age 76, both hemispheres 2.8
Pretectal area
nTPM: 5.0
2407 Male, age 75, both hemispheres 13.2
1815 Male, age 53, unknown 11.6
2007 Male, age 72, unknown 7.9
2273 Male, age 74, both hemispheres 4.6
2667 Female, age 75, unknown 4.3
1817 Female, age 42, unknown 4.2
2316 Male, age 76, right hemisphere 3.8
1816 Male, age 51, unknown 1.9
2224 Female, age 72, unknown 1.7
1944 Female, age 72, unknown 1.3
2825 Male, age 18, unknown 0.8
Red nucleus
nTPM: 11.9
2503 Female, age 72, unknown 19.8
2823 Male, age 76, right hemisphere 17.8
1865 Male, age 51, unknown 15.3
1904 Male, age 53, unknown 14.9
2769 Male, age 72, unknown 11.4
1821 Female, age 72, unknown 10.2
2588 Male, age 74, left hemisphere 10.1
2785 Male, age 18, unknown 10.0
2584 Male, age 75, left hemisphere 9.9
2725 Female, age 75, unknown 9.5
1954 Female, age 42, unknown 7.5
2227 Male, age 72, unknown 6.8
Substantia nigra
nTPM: 7.0
1889 Female, age 72, unknown 11.9
2699 Male, age 18, unknown 11.4
2583 Male, age 75, right hemisphere 10.1
2241 Male, age 72, unknown 8.1
1851 Male, age 51, unknown 7.4
2409 Female, age 72, unknown 7.3
2590 Female, age 75, unknown 5.2
1941 Male, age 53, unknown 5.0
1916 Female, age 42, unknown 2.0
2665 Male, age 74, both hemispheres 2.0
Superior colliculus
nTPM: 8.0
1895 Male, age 76, right hemisphere 15.3
1913 Female, age 42, unknown 13.5
2087 Female, age 72, unknown 9.0
1995 Male, age 72, unknown 8.6
2587 Male, age 74, left hemisphere 7.3
1839 Male, age 51, unknown 7.1
2668 Female, age 75, unknown 6.1
2664 Male, age 75, both hemispheres 5.5
1796 Male, age 53, unknown 4.3
2261 Male, age 18, unknown 3.6
Ventral tegmental area
nTPM: 5.5
2218 Male, age 76, both hemispheres 8.7
1915 Female, age 42, unknown 6.4
2021 Male, age 53, unknown 6.1
1942 Male, age 51, unknown 5.4
2410 Female, age 72, unknown 4.1
2223 Female, age 72, unknown 2.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 289.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 289.6
Samples: 139

Max nTPM: 1083.7
Min nTPM: 53.2
Std nTPM: 172.1
Median nTPM: 238.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1083.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 902.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 826.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 731.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 712.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 675.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 660.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 600.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 592.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 590.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 586.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 683.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 683.5
FF:10158-103A5 76 years, female 683.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 342.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 327.9
Samples: 4

Max nTPM: 580.5
Min nTPM: 197.5
Sample A Female 280.7
Sample B Female 197.5
Sample C Male 252.8
Sample D Male 580.5
Midbrain
nTPM: 342.4
Samples: 4

Max nTPM: 685.4
Min nTPM: 163.1
Sample A Female 685.4
Sample B Female 339.5
Sample C Male 163.1
Sample D Male 181.6
Periaqueductal gray
nTPM: 215.9
Samples: 3

Max nTPM: 266.9
Min nTPM: 152.4
Sample B Female 266.9
Sample C Male 152.4
Sample D Male 228.5
Superior colliculi
nTPM: 245.1
Samples: 4

Max nTPM: 332.8
Min nTPM: 115.7
Sample A Female 264.4
Sample B Female 115.7
Sample C Male 267.5
Sample D Male 332.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 363.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 363.4
Samples: 4

Max nTPM: 405.5
Min nTPM: 315.5
Sample A Male 342.7
Sample B Male 315.5
Sample C Female 405.5
Sample D Female 389.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.6
70946633 Antisense, RP_050505_01_F05, Mouse strain C57BL/6J (56 days, male) 9.6

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