MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:98.2 nTPM
HPA Brain:215.3 nTPM
GTEx:98.2 nTPM
FANTOM5:206.5 Scaled Tags Per Million
Pig:129.4 nTPM
Mouse:97.6 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 215.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 204.3
2586 Male, age 75, left hemisphere 257.4
2666 Male, age 74, left hemisphere 248.7
2019 Male, age 18, unknown 244.3
1827 Male, age 72, unknown 205.5
2411 Female, age 72, unknown 192.8
2828 Female, age 72, unknown 191.3
2219 Male, age 76, both hemispheres 186.0
1830 Male, age 51, unknown 173.6
1870 Female, age 42, unknown 172.1
1833 Male, age 53, unknown 171.3
Dorsal raphe nucleus
nTPM: 161.9
2750 Male, age 76, both hemispheres 187.5
2047 Male, age 72, unknown 171.6
2298 Female, age 72, unknown 167.4
1828 Male, age 53, unknown 162.9
2016 Female, age 72, unknown 119.9
Inferior colliculus
nTPM: 160.5
1890 Male, age 53, unknown 170.2
2097 Female, age 72, unknown 167.6
2849 Male, age 72, unknown 152.2
1848 Female, age 42, unknown 152.0
Median raphe nucleus
nTPM: 173.2
2220 Male, age 76, midline 173.2
Periaquaductal grey, anterior
nTPM: 189.1
2502 Female, age 75, unknown 211.3
1795 Male, age 51, unknown 189.0
1947 Male, age 18, unknown 167.0
Periaquaductal grey, dorsal
nTPM: 141.1
1831 Male, age 72, unknown 158.9
2464 Female, age 72, unknown 155.4
1840 Male, age 53, unknown 131.0
2850 Male, age 76, both hemispheres 119.2
Periaquaductal grey, lateral
nTPM: 133.8
2053 Male, age 18, unknown 148.5
2272 Male, age 74, both hemispheres 138.5
2140 Male, age 76, both hemispheres 114.6
Pretectal area
nTPM: 215.3
1816 Male, age 51, unknown 313.1
2007 Male, age 72, unknown 298.2
1817 Female, age 42, unknown 288.0
1944 Female, age 72, unknown 280.5
1815 Male, age 53, unknown 256.6
2407 Male, age 75, both hemispheres 186.9
2667 Female, age 75, unknown 163.5
2825 Male, age 18, unknown 149.6
2224 Female, age 72, unknown 147.7
2316 Male, age 76, right hemisphere 145.2
2273 Male, age 74, both hemispheres 138.8
Red nucleus
nTPM: 207.5
2588 Male, age 74, left hemisphere 247.6
2785 Male, age 18, unknown 245.2
2584 Male, age 75, left hemisphere 236.8
2725 Female, age 75, unknown 211.5
1865 Male, age 51, unknown 208.4
2503 Female, age 72, unknown 207.4
2823 Male, age 76, right hemisphere 200.1
1904 Male, age 53, unknown 193.1
1821 Female, age 72, unknown 192.1
1954 Female, age 42, unknown 185.5
2769 Male, age 72, unknown 181.9
2227 Male, age 72, unknown 180.8
Substantia nigra
nTPM: 205.0
1889 Female, age 72, unknown 249.1
1941 Male, age 53, unknown 240.0
1916 Female, age 42, unknown 232.3
1851 Male, age 51, unknown 210.2
2665 Male, age 74, both hemispheres 207.5
2583 Male, age 75, right hemisphere 198.8
2409 Female, age 72, unknown 186.8
2590 Female, age 75, unknown 185.0
2241 Male, age 72, unknown 172.3
2699 Male, age 18, unknown 167.8
Superior colliculus
nTPM: 200.3
2087 Female, age 72, unknown 251.4
2668 Female, age 75, unknown 237.1
2261 Male, age 18, unknown 230.8
1796 Male, age 53, unknown 201.0
1913 Female, age 42, unknown 193.7
2664 Male, age 75, both hemispheres 188.9
2587 Male, age 74, left hemisphere 182.0
1895 Male, age 76, right hemisphere 178.5
1995 Male, age 72, unknown 177.1
1839 Male, age 51, unknown 162.1
Ventral tegmental area
nTPM: 180.1
2410 Female, age 72, unknown 216.4
2218 Male, age 76, both hemispheres 194.1
1915 Female, age 42, unknown 184.7
2223 Female, age 72, unknown 178.2
1942 Male, age 51, unknown 158.5
2021 Male, age 53, unknown 148.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 98.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 98.2
Samples: 139

Max nTPM: 262.1
Min nTPM: 45.7
Std nTPM: 28.7
Median nTPM: 92.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 262.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 198.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 164.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 160.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 152.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 151.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 147.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 143.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 139.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 139.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 137.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 206.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 206.5
FF:10158-103A5 76 years, female 206.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 129.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 116.5
Samples: 4

Max nTPM: 149.5
Min nTPM: 87.7
Sample A Female 140.5
Sample B Female 87.7
Sample C Male 149.5
Sample D Male 88.3
Midbrain
nTPM: 125.6
Samples: 4

Max nTPM: 152.7
Min nTPM: 95.7
Sample A Female 122.3
Sample B Female 95.7
Sample C Male 152.7
Sample D Male 131.8
Periaqueductal gray
nTPM: 98.0
Samples: 3

Max nTPM: 116.2
Min nTPM: 85.0
Sample B Female 92.8
Sample C Male 116.2
Sample D Male 85.0
Superior colliculi
nTPM: 129.4
Samples: 4

Max nTPM: 158.7
Min nTPM: 88.6
Sample A Female 134.6
Sample B Female 88.6
Sample C Male 158.7
Sample D Male 135.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 97.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 97.6
Samples: 4

Max nTPM: 104.1
Min nTPM: 88.3
Sample A Male 104.1
Sample B Male 88.3
Sample C Female 97.1
Sample D Female 100.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
70946413 Antisense, RP_050428_01_B04, Mouse strain C57BL/6J (56 days, male) 12.3
70795466 Antisense, RP_050712_01_F05, Mouse strain C57BL/6J (56 days, male) 0.0

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