MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.3 nTPM
HPA Brain:155.5 nTPM
GTEx:0.3 nTPM
FANTOM5:0.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 155.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 138.5
2219 Male, age 76, both hemispheres 166.0
1827 Male, age 72, unknown 160.8
2411 Female, age 72, unknown 149.0
1833 Male, age 53, unknown 148.1
1830 Male, age 51, unknown 142.0
2828 Female, age 72, unknown 140.1
2019 Male, age 18, unknown 132.7
2666 Male, age 74, left hemisphere 121.0
2586 Male, age 75, left hemisphere 118.9
1870 Female, age 42, unknown 106.1
Dorsal raphe nucleus
nTPM: 135.2
2047 Male, age 72, unknown 153.2
2016 Female, age 72, unknown 143.4
2750 Male, age 76, both hemispheres 137.4
1828 Male, age 53, unknown 123.4
2298 Female, age 72, unknown 118.4
Inferior colliculus
nTPM: 145.6
2849 Male, age 72, unknown 157.2
1848 Female, age 42, unknown 148.3
2097 Female, age 72, unknown 139.2
1890 Male, age 53, unknown 137.5
Median raphe nucleus
nTPM: 136.3
2220 Male, age 76, midline 136.3
Periaquaductal grey, anterior
nTPM: 121.1
1947 Male, age 18, unknown 137.6
1795 Male, age 51, unknown 128.1
2502 Female, age 75, unknown 97.5
Periaquaductal grey, dorsal
nTPM: 155.5
1840 Male, age 53, unknown 160.4
1831 Male, age 72, unknown 158.8
2850 Male, age 76, both hemispheres 152.4
2464 Female, age 72, unknown 150.2
Periaquaductal grey, lateral
nTPM: 153.4
2140 Male, age 76, both hemispheres 163.4
2272 Male, age 74, both hemispheres 159.6
2053 Male, age 18, unknown 137.3
Pretectal area
nTPM: 140.3
2273 Male, age 74, both hemispheres 163.4
2825 Male, age 18, unknown 156.0
2316 Male, age 76, right hemisphere 155.6
2667 Female, age 75, unknown 149.3
1944 Female, age 72, unknown 142.8
2407 Male, age 75, both hemispheres 141.1
2224 Female, age 72, unknown 139.8
1816 Male, age 51, unknown 133.8
1815 Male, age 53, unknown 128.4
2007 Male, age 72, unknown 125.1
1817 Female, age 42, unknown 107.9
Red nucleus
nTPM: 132.5
2823 Male, age 76, right hemisphere 170.3
2588 Male, age 74, left hemisphere 141.9
1954 Female, age 42, unknown 137.4
2725 Female, age 75, unknown 136.9
2584 Male, age 75, left hemisphere 132.3
1865 Male, age 51, unknown 130.9
2503 Female, age 72, unknown 130.7
1904 Male, age 53, unknown 127.0
2227 Male, age 72, unknown 122.8
2769 Male, age 72, unknown 121.8
1821 Female, age 72, unknown 120.5
2785 Male, age 18, unknown 118.0
Substantia nigra
nTPM: 134.3
2590 Female, age 75, unknown 157.4
1941 Male, age 53, unknown 155.7
2583 Male, age 75, right hemisphere 151.1
2409 Female, age 72, unknown 141.1
2699 Male, age 18, unknown 131.1
1916 Female, age 42, unknown 124.8
1851 Male, age 51, unknown 122.7
1889 Female, age 72, unknown 122.7
2241 Male, age 72, unknown 119.3
2665 Male, age 74, both hemispheres 117.0
Superior colliculus
nTPM: 136.3
1895 Male, age 76, right hemisphere 159.2
2087 Female, age 72, unknown 152.9
2261 Male, age 18, unknown 138.7
1995 Male, age 72, unknown 133.8
2664 Male, age 75, both hemispheres 132.5
1839 Male, age 51, unknown 131.5
2587 Male, age 74, left hemisphere 130.8
1913 Female, age 42, unknown 128.1
1796 Male, age 53, unknown 128.0
2668 Female, age 75, unknown 127.4
Ventral tegmental area
nTPM: 132.7
1942 Male, age 51, unknown 141.4
2021 Male, age 53, unknown 140.8
2410 Female, age 72, unknown 135.2
2218 Male, age 76, both hemispheres 133.5
2223 Female, age 72, unknown 125.6
1915 Female, age 42, unknown 119.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 0.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.3
Samples: 139

Max nTPM: 1.2
Min nTPM: 0.0
Std nTPM: 0.3
Median nTPM: 0.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 1.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 1.2
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 1.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 0.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 0.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 0.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 0.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 0.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.5
FF:10158-103A5 76 years, female 0.5

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