MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.6 nTPM
HPA Brain:17.7 nTPM
GTEx:18.6 nTPM
FANTOM5:26.7 Scaled Tags Per Million
Pig:12.1 nTPM
Mouse:6.5 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.8
2411 Female, age 72, unknown 19.1
2586 Male, age 75, left hemisphere 19.0
2019 Male, age 18, unknown 18.6
2219 Male, age 76, both hemispheres 16.7
1827 Male, age 72, unknown 16.5
1833 Male, age 53, unknown 15.9
2828 Female, age 72, unknown 15.9
2666 Male, age 74, left hemisphere 15.7
1870 Female, age 42, unknown 15.5
1830 Male, age 51, unknown 15.3
Dorsal raphe nucleus
nTPM: 14.8
2750 Male, age 76, both hemispheres 16.9
2298 Female, age 72, unknown 16.0
2047 Male, age 72, unknown 15.3
2016 Female, age 72, unknown 13.0
1828 Male, age 53, unknown 12.7
Inferior colliculus
nTPM: 14.3
2097 Female, age 72, unknown 16.0
1890 Male, age 53, unknown 14.2
1848 Female, age 42, unknown 14.1
2849 Male, age 72, unknown 12.9
Median raphe nucleus
nTPM: 13.8
2220 Male, age 76, midline 13.8
Periaquaductal grey, anterior
nTPM: 17.1
2502 Female, age 75, unknown 20.1
1795 Male, age 51, unknown 15.8
1947 Male, age 18, unknown 15.4
Periaquaductal grey, dorsal
nTPM: 13.5
2464 Female, age 72, unknown 15.2
1831 Male, age 72, unknown 13.6
1840 Male, age 53, unknown 13.5
2850 Male, age 76, both hemispheres 11.5
Periaquaductal grey, lateral
nTPM: 13.0
2272 Male, age 74, both hemispheres 14.0
2053 Male, age 18, unknown 13.1
2140 Male, age 76, both hemispheres 11.8
Pretectal area
nTPM: 16.6
2007 Male, age 72, unknown 20.4
1816 Male, age 51, unknown 20.0
2667 Female, age 75, unknown 19.5
1817 Female, age 42, unknown 17.9
1815 Male, age 53, unknown 17.4
1944 Female, age 72, unknown 16.4
2316 Male, age 76, right hemisphere 15.1
2273 Male, age 74, both hemispheres 14.3
2224 Female, age 72, unknown 13.9
2407 Male, age 75, both hemispheres 13.9
2825 Male, age 18, unknown 13.5
Red nucleus
nTPM: 17.7
2588 Male, age 74, left hemisphere 20.6
2785 Male, age 18, unknown 19.7
2584 Male, age 75, left hemisphere 18.7
2503 Female, age 72, unknown 18.0
1865 Male, age 51, unknown 17.6
1821 Female, age 72, unknown 17.5
1904 Male, age 53, unknown 17.4
1954 Female, age 42, unknown 17.2
2227 Male, age 72, unknown 16.9
2769 Male, age 72, unknown 16.9
2725 Female, age 75, unknown 16.1
2823 Male, age 76, right hemisphere 15.1
Substantia nigra
nTPM: 15.8
1851 Male, age 51, unknown 18.8
1916 Female, age 42, unknown 18.2
1941 Male, age 53, unknown 18.1
1889 Female, age 72, unknown 16.6
2409 Female, age 72, unknown 15.5
2583 Male, age 75, right hemisphere 15.2
2699 Male, age 18, unknown 14.9
2590 Female, age 75, unknown 14.0
2665 Male, age 74, both hemispheres 13.7
2241 Male, age 72, unknown 13.3
Superior colliculus
nTPM: 16.3
1796 Male, age 53, unknown 18.1
2261 Male, age 18, unknown 18.1
1913 Female, age 42, unknown 18.0
1995 Male, age 72, unknown 17.8
2087 Female, age 72, unknown 16.1
1895 Male, age 76, right hemisphere 16.0
2587 Male, age 74, left hemisphere 15.5
1839 Male, age 51, unknown 14.9
2664 Male, age 75, both hemispheres 14.1
2668 Female, age 75, unknown 14.1
Ventral tegmental area
nTPM: 16.3
2410 Female, age 72, unknown 19.1
1915 Female, age 42, unknown 17.3
2223 Female, age 72, unknown 16.6
2218 Male, age 76, both hemispheres 16.2
2021 Male, age 53, unknown 14.5
1942 Male, age 51, unknown 14.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.6
Samples: 139

Max nTPM: 33.0
Min nTPM: 9.4
Std nTPM: 4.5
Median nTPM: 18.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 33.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 30.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 30.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 28.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 28.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 27.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 27.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 27.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 27.4
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 27.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 26.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.7
FF:10158-103A5 76 years, female 26.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.8
Samples: 4

Max nTPM: 12.6
Min nTPM: 10.4
Sample A Female 12.6
Sample B Female 10.4
Sample C Male 12.4
Sample D Male 11.8
Midbrain
nTPM: 11.7
Samples: 4

Max nTPM: 12.9
Min nTPM: 9.6
Sample A Female 9.6
Sample B Female 12.5
Sample C Male 11.9
Sample D Male 12.9
Periaqueductal gray
nTPM: 12.0
Samples: 3

Max nTPM: 12.2
Min nTPM: 11.8
Sample B Female 12.0
Sample C Male 11.8
Sample D Male 12.2
Superior colliculi
nTPM: 12.1
Samples: 4

Max nTPM: 13.1
Min nTPM: 11.3
Sample A Female 12.4
Sample B Female 11.4
Sample C Male 13.1
Sample D Male 11.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.5
Samples: 4

Max nTPM: 7.2
Min nTPM: 6.0
Sample A Male 7.2
Sample B Male 6.0
Sample C Female 6.5
Sample D Female 6.1

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