MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5753.6 nTPM
HPA Brain:2259.2 nTPM
GTEx:5753.6 nTPM
FANTOM5:22.8 Scaled Tags Per Million
Pig:2002.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 2259.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1670.2
2666 Male, age 74, left hemisphere 2236.2
1870 Female, age 42, unknown 2046.7
1830 Male, age 51, unknown 1971.0
2411 Female, age 72, unknown 1901.8
2828 Female, age 72, unknown 1688.5
1833 Male, age 53, unknown 1677.2
2019 Male, age 18, unknown 1554.7
1827 Male, age 72, unknown 1507.1
2586 Male, age 75, left hemisphere 1191.6
2219 Male, age 76, both hemispheres 927.0
Dorsal raphe nucleus
nTPM: 1496.2
2750 Male, age 76, both hemispheres 1638.7
1828 Male, age 53, unknown 1598.6
2016 Female, age 72, unknown 1559.1
2298 Female, age 72, unknown 1342.8
2047 Male, age 72, unknown 1341.6
Inferior colliculus
nTPM: 1242.9
1890 Male, age 53, unknown 1354.2
1848 Female, age 42, unknown 1259.7
2097 Female, age 72, unknown 1215.5
2849 Male, age 72, unknown 1142.3
Median raphe nucleus
nTPM: 1302.5
2220 Male, age 76, midline 1302.5
Periaquaductal grey, anterior
nTPM: 1473.0
1947 Male, age 18, unknown 1793.9
1795 Male, age 51, unknown 1411.7
2502 Female, age 75, unknown 1213.3
Periaquaductal grey, dorsal
nTPM: 1168.8
1831 Male, age 72, unknown 1461.8
2464 Female, age 72, unknown 1165.2
2850 Male, age 76, both hemispheres 1081.1
1840 Male, age 53, unknown 967.2
Periaquaductal grey, lateral
nTPM: 1206.5
2053 Male, age 18, unknown 1366.7
2272 Male, age 74, both hemispheres 1229.0
2140 Male, age 76, both hemispheres 1023.9
Pretectal area
nTPM: 1297.2
1817 Female, age 42, unknown 1510.3
1815 Male, age 53, unknown 1485.2
2825 Male, age 18, unknown 1460.9
2007 Male, age 72, unknown 1409.0
2316 Male, age 76, right hemisphere 1402.6
2273 Male, age 74, both hemispheres 1263.6
2407 Male, age 75, both hemispheres 1241.8
2224 Female, age 72, unknown 1227.5
1816 Male, age 51, unknown 1176.3
1944 Female, age 72, unknown 1152.6
2667 Female, age 75, unknown 939.5
Red nucleus
nTPM: 2259.2
2503 Female, age 72, unknown 2985.4
2588 Male, age 74, left hemisphere 2819.4
2725 Female, age 75, unknown 2677.0
1821 Female, age 72, unknown 2556.5
1865 Male, age 51, unknown 2366.4
1904 Male, age 53, unknown 2294.9
1954 Female, age 42, unknown 2292.6
2227 Male, age 72, unknown 2181.0
2769 Male, age 72, unknown 2141.3
2823 Male, age 76, right hemisphere 1728.2
2785 Male, age 18, unknown 1550.7
2584 Male, age 75, left hemisphere 1517.6
Substantia nigra
nTPM: 1884.3
2590 Female, age 75, unknown 2142.9
2665 Male, age 74, both hemispheres 2142.4
1916 Female, age 42, unknown 2140.0
1851 Male, age 51, unknown 1998.8
2699 Male, age 18, unknown 1953.7
2409 Female, age 72, unknown 1884.9
2241 Male, age 72, unknown 1694.5
2583 Male, age 75, right hemisphere 1690.6
1889 Female, age 72, unknown 1627.1
1941 Male, age 53, unknown 1568.2
Superior colliculus
nTPM: 1507.6
2587 Male, age 74, left hemisphere 2127.5
1913 Female, age 42, unknown 1857.3
2668 Female, age 75, unknown 1747.3
1995 Male, age 72, unknown 1599.2
1839 Male, age 51, unknown 1469.1
1796 Male, age 53, unknown 1435.0
2261 Male, age 18, unknown 1316.1
1895 Male, age 76, right hemisphere 1260.5
2087 Female, age 72, unknown 1165.0
2664 Male, age 75, both hemispheres 1099.0
Ventral tegmental area
nTPM: 1909.1
2223 Female, age 72, unknown 2504.7
2410 Female, age 72, unknown 2041.5
2021 Male, age 53, unknown 1903.3
1915 Female, age 42, unknown 1900.7
2218 Male, age 76, both hemispheres 1570.4
1942 Male, age 51, unknown 1534.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5753.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5753.6
Samples: 139

Max nTPM: 17729.4
Min nTPM: 2058.7
Std nTPM: 2432.4
Median nTPM: 5133.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 17729.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 16520.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 12611.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 12147.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 11423.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 10656.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 9996.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 9789.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 9681.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 9655.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 9555.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.8
FF:10158-103A5 76 years, female 22.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 2002.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2002.7
Samples: 4

Max nTPM: 2623.7
Min nTPM: 1602.1
Sample A Female 2623.7
Sample B Female 2055.6
Sample C Male 1729.4
Sample D Male 1602.1
Midbrain
nTPM: 1879.7
Samples: 4

Max nTPM: 3310.2
Min nTPM: 979.6
Sample A Female 3310.2
Sample B Female 2010.6
Sample C Male 1218.4
Sample D Male 979.6
Periaqueductal gray
nTPM: 1443.5
Samples: 3

Max nTPM: 1585.0
Min nTPM: 1195.0
Sample B Female 1585.0
Sample C Male 1550.5
Sample D Male 1195.0
Superior colliculi
nTPM: 1476.3
Samples: 4

Max nTPM: 1852.0
Min nTPM: 1247.1
Sample A Female 1852.0
Sample B Female 1247.1
Sample C Male 1528.9
Sample D Male 1277.3

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