MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.2 nTPM
HPA Brain:74.6 nTPM
GTEx:48.2 nTPM
FANTOM5:94.4 Scaled Tags Per Million
Pig:53.6 nTPM
Mouse:22.4 nTPM
Allen mouse:13.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 74.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.2
2411 Female, age 72, unknown 72.5
1833 Male, age 53, unknown 68.5
1830 Male, age 51, unknown 66.9
1870 Female, age 42, unknown 64.7
2219 Male, age 76, both hemispheres 60.4
2019 Male, age 18, unknown 59.9
2828 Female, age 72, unknown 56.5
1827 Male, age 72, unknown 42.4
2586 Male, age 75, left hemisphere 36.7
2666 Male, age 74, left hemisphere 33.2
Dorsal raphe nucleus
nTPM: 47.9
2750 Male, age 76, both hemispheres 81.8
2016 Female, age 72, unknown 49.0
1828 Male, age 53, unknown 42.3
2298 Female, age 72, unknown 34.8
2047 Male, age 72, unknown 31.5
Inferior colliculus
nTPM: 44.9
2097 Female, age 72, unknown 47.1
1890 Male, age 53, unknown 45.3
1848 Female, age 42, unknown 44.7
2849 Male, age 72, unknown 42.7
Median raphe nucleus
nTPM: 31.6
2220 Male, age 76, midline 31.6
Periaquaductal grey, anterior
nTPM: 40.8
2502 Female, age 75, unknown 45.1
1947 Male, age 18, unknown 40.0
1795 Male, age 51, unknown 37.4
Periaquaductal grey, dorsal
nTPM: 31.0
2464 Female, age 72, unknown 51.9
1831 Male, age 72, unknown 27.9
1840 Male, age 53, unknown 26.4
2850 Male, age 76, both hemispheres 17.9
Periaquaductal grey, lateral
nTPM: 38.4
2272 Male, age 74, both hemispheres 55.6
2053 Male, age 18, unknown 36.2
2140 Male, age 76, both hemispheres 23.5
Pretectal area
nTPM: 48.2
2316 Male, age 76, right hemisphere 81.4
2667 Female, age 75, unknown 61.8
1815 Male, age 53, unknown 55.0
1817 Female, age 42, unknown 54.7
2007 Male, age 72, unknown 49.1
2224 Female, age 72, unknown 46.5
2273 Male, age 74, both hemispheres 43.9
2825 Male, age 18, unknown 39.3
2407 Male, age 75, both hemispheres 38.6
1944 Female, age 72, unknown 30.5
1816 Male, age 51, unknown 29.0
Red nucleus
nTPM: 74.6
1904 Male, age 53, unknown 95.3
2769 Male, age 72, unknown 89.6
2227 Male, age 72, unknown 88.5
2503 Female, age 72, unknown 85.9
2823 Male, age 76, right hemisphere 84.3
1865 Male, age 51, unknown 83.8
2785 Male, age 18, unknown 77.2
1954 Female, age 42, unknown 76.3
1821 Female, age 72, unknown 75.4
2588 Male, age 74, left hemisphere 60.2
2725 Female, age 75, unknown 42.2
2584 Male, age 75, left hemisphere 36.9
Substantia nigra
nTPM: 43.9
2699 Male, age 18, unknown 60.7
1851 Male, age 51, unknown 52.3
1889 Female, age 72, unknown 49.8
2409 Female, age 72, unknown 44.2
2665 Male, age 74, both hemispheres 42.1
2590 Female, age 75, unknown 41.2
2583 Male, age 75, right hemisphere 40.2
1916 Female, age 42, unknown 38.5
2241 Male, age 72, unknown 36.3
1941 Male, age 53, unknown 33.7
Superior colliculus
nTPM: 56.0
1895 Male, age 76, right hemisphere 88.7
1995 Male, age 72, unknown 77.3
1913 Female, age 42, unknown 68.1
2668 Female, age 75, unknown 64.5
1839 Male, age 51, unknown 53.7
2587 Male, age 74, left hemisphere 51.5
1796 Male, age 53, unknown 48.2
2261 Male, age 18, unknown 38.5
2087 Female, age 72, unknown 35.0
2664 Male, age 75, both hemispheres 34.1
Ventral tegmental area
nTPM: 48.1
2410 Female, age 72, unknown 60.7
2223 Female, age 72, unknown 53.7
1942 Male, age 51, unknown 47.3
1915 Female, age 42, unknown 46.5
2218 Male, age 76, both hemispheres 41.5
2021 Male, age 53, unknown 39.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.2
Samples: 139

Max nTPM: 107.3
Min nTPM: 10.4
Std nTPM: 18.1
Median nTPM: 46.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 107.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 98.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 92.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 89.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 85.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 84.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 83.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 79.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 78.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 77.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 77.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.4
FF:10158-103A5 76 years, female 94.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.6
Samples: 4

Max nTPM: 73.7
Min nTPM: 36.1
Sample A Female 62.6
Sample B Female 36.1
Sample C Male 42.0
Sample D Male 73.7
Midbrain
nTPM: 53.4
Samples: 4

Max nTPM: 76.2
Min nTPM: 38.4
Sample A Female 76.2
Sample B Female 59.4
Sample C Male 39.7
Sample D Male 38.4
Periaqueductal gray
nTPM: 43.9
Samples: 3

Max nTPM: 56.4
Min nTPM: 36.2
Sample B Female 56.4
Sample C Male 39.2
Sample D Male 36.2
Superior colliculi
nTPM: 51.1
Samples: 4

Max nTPM: 66.0
Min nTPM: 32.9
Sample A Female 66.0
Sample B Female 32.9
Sample C Male 51.5
Sample D Male 54.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.4
Samples: 4

Max nTPM: 25.8
Min nTPM: 18.7
Sample A Male 21.1
Sample B Male 18.7
Sample C Female 23.9
Sample D Female 25.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.8
2449 Antisense, RP_Baylor_103184, Mouse strain C57BL/6J (56 days, male) 13.8
2448 Antisense, RP_Baylor_103184, Mouse strain C57BL/6J (56 days, male) 9.9

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