MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.1 nTPM
HPA Brain:48.4 nTPM
GTEx:32.1 nTPM
FANTOM5:131.4 Scaled Tags Per Million
Pig:28.4 nTPM
Mouse:9.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.9
2019 Male, age 18, unknown 54.8
1870 Female, age 42, unknown 50.8
1830 Male, age 51, unknown 49.1
2411 Female, age 72, unknown 46.0
1833 Male, age 53, unknown 37.4
2828 Female, age 72, unknown 25.4
2666 Male, age 74, left hemisphere 23.3
2219 Male, age 76, both hemispheres 22.5
1827 Male, age 72, unknown 21.2
2586 Male, age 75, left hemisphere 19.0
Dorsal raphe nucleus
nTPM: 30.8
2750 Male, age 76, both hemispheres 69.0
1828 Male, age 53, unknown 25.2
2016 Female, age 72, unknown 22.1
2047 Male, age 72, unknown 20.8
2298 Female, age 72, unknown 16.8
Inferior colliculus
nTPM: 18.9
1890 Male, age 53, unknown 24.6
1848 Female, age 42, unknown 21.3
2849 Male, age 72, unknown 15.6
2097 Female, age 72, unknown 14.0
Median raphe nucleus
nTPM: 39.5
2220 Male, age 76, midline 39.5
Periaquaductal grey, anterior
nTPM: 16.3
2502 Female, age 75, unknown 17.4
1947 Male, age 18, unknown 17.1
1795 Male, age 51, unknown 14.3
Periaquaductal grey, dorsal
nTPM: 16.8
1831 Male, age 72, unknown 21.3
2464 Female, age 72, unknown 20.5
2850 Male, age 76, both hemispheres 15.6
1840 Male, age 53, unknown 9.9
Periaquaductal grey, lateral
nTPM: 19.8
2272 Male, age 74, both hemispheres 25.1
2053 Male, age 18, unknown 21.3
2140 Male, age 76, both hemispheres 12.9
Pretectal area
nTPM: 18.3
1815 Male, age 53, unknown 24.7
2273 Male, age 74, both hemispheres 23.9
2407 Male, age 75, both hemispheres 22.7
2007 Male, age 72, unknown 21.7
1817 Female, age 42, unknown 21.5
2316 Male, age 76, right hemisphere 19.8
2825 Male, age 18, unknown 17.5
2224 Female, age 72, unknown 15.4
2667 Female, age 75, unknown 13.8
1944 Female, age 72, unknown 11.5
1816 Male, age 51, unknown 8.6
Red nucleus
nTPM: 48.4
1865 Male, age 51, unknown 69.2
2769 Male, age 72, unknown 56.0
1821 Female, age 72, unknown 54.5
1904 Male, age 53, unknown 53.2
2785 Male, age 18, unknown 52.6
2227 Male, age 72, unknown 52.2
2588 Male, age 74, left hemisphere 47.6
2823 Male, age 76, right hemisphere 45.8
1954 Female, age 42, unknown 43.1
2503 Female, age 72, unknown 38.6
2584 Male, age 75, left hemisphere 36.2
2725 Female, age 75, unknown 32.3
Substantia nigra
nTPM: 23.9
1889 Female, age 72, unknown 28.9
2583 Male, age 75, right hemisphere 28.6
2590 Female, age 75, unknown 28.0
2409 Female, age 72, unknown 25.9
1941 Male, age 53, unknown 25.3
1851 Male, age 51, unknown 24.9
2241 Male, age 72, unknown 21.9
2665 Male, age 74, both hemispheres 20.5
1916 Female, age 42, unknown 18.6
2699 Male, age 18, unknown 17.0
Superior colliculus
nTPM: 23.1
1913 Female, age 42, unknown 38.0
2668 Female, age 75, unknown 31.9
2587 Male, age 74, left hemisphere 30.5
1839 Male, age 51, unknown 26.1
1995 Male, age 72, unknown 25.6
1895 Male, age 76, right hemisphere 18.8
1796 Male, age 53, unknown 16.7
2664 Male, age 75, both hemispheres 16.1
2087 Female, age 72, unknown 13.7
2261 Male, age 18, unknown 13.5
Ventral tegmental area
nTPM: 38.9
2223 Female, age 72, unknown 91.2
2218 Male, age 76, both hemispheres 34.5
2410 Female, age 72, unknown 31.5
2021 Male, age 53, unknown 29.0
1942 Male, age 51, unknown 27.0
1915 Female, age 42, unknown 19.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.1
Samples: 139

Max nTPM: 116.5
Min nTPM: 8.7
Std nTPM: 18.5
Median nTPM: 28.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 116.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 103.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 86.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 82.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 72.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 70.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 69.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 67.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 66.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 65.9
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 61.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 131.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 131.4
FF:10158-103A5 76 years, female 131.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.3
Samples: 4

Max nTPM: 28.0
Min nTPM: 17.6
Sample A Female 24.8
Sample B Female 18.6
Sample C Male 17.6
Sample D Male 28.0
Midbrain
nTPM: 28.4
Samples: 4

Max nTPM: 68.5
Min nTPM: 12.2
Sample A Female 68.5
Sample B Female 20.3
Sample C Male 12.5
Sample D Male 12.2
Periaqueductal gray
nTPM: 17.2
Samples: 3

Max nTPM: 19.3
Min nTPM: 15.1
Sample B Female 19.3
Sample C Male 15.1
Sample D Male 17.3
Superior colliculi
nTPM: 19.8
Samples: 4

Max nTPM: 23.9
Min nTPM: 16.8
Sample A Female 23.9
Sample B Female 19.5
Sample C Male 16.8
Sample D Male 19.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.9
Samples: 4

Max nTPM: 10.5
Min nTPM: 9.3
Sample A Male 9.3
Sample B Male 9.9
Sample C Female 9.7
Sample D Female 10.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69262252 Antisense, RP_050301_01_H12, Mouse strain C57BL/6J (56 days, male) 0.1

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