MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:258.7 nTPM
HPA Brain:10.6 nTPM
GTEx:258.7 nTPM
FANTOM5:194.9 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.8
2666 Male, age 74, left hemisphere 8.6
1870 Female, age 42, unknown 8.5
2019 Male, age 18, unknown 8.3
1833 Male, age 53, unknown 8.0
2411 Female, age 72, unknown 7.8
2828 Female, age 72, unknown 7.8
1830 Male, age 51, unknown 6.3
1827 Male, age 72, unknown 6.2
2586 Male, age 75, left hemisphere 4.7
2219 Male, age 76, both hemispheres 2.3
Dorsal raphe nucleus
nTPM: 9.0
1828 Male, age 53, unknown 10.6
2750 Male, age 76, both hemispheres 9.2
2047 Male, age 72, unknown 8.7
2298 Female, age 72, unknown 8.2
2016 Female, age 72, unknown 8.1
Inferior colliculus
nTPM: 6.8
1848 Female, age 42, unknown 7.6
2849 Male, age 72, unknown 7.4
1890 Male, age 53, unknown 6.9
2097 Female, age 72, unknown 5.3
Median raphe nucleus
nTPM: 10.6
2220 Male, age 76, midline 10.6
Periaquaductal grey, anterior
nTPM: 7.3
2502 Female, age 75, unknown 8.3
1947 Male, age 18, unknown 6.9
1795 Male, age 51, unknown 6.6
Periaquaductal grey, dorsal
nTPM: 7.6
2464 Female, age 72, unknown 8.2
1831 Male, age 72, unknown 7.7
2850 Male, age 76, both hemispheres 7.5
1840 Male, age 53, unknown 7.0
Periaquaductal grey, lateral
nTPM: 8.3
2140 Male, age 76, both hemispheres 10.7
2272 Male, age 74, both hemispheres 7.2
2053 Male, age 18, unknown 7.0
Pretectal area
nTPM: 6.1
2224 Female, age 72, unknown 8.3
1817 Female, age 42, unknown 8.1
1944 Female, age 72, unknown 7.9
2007 Male, age 72, unknown 6.7
2273 Male, age 74, both hemispheres 6.2
2825 Male, age 18, unknown 6.1
2667 Female, age 75, unknown 6.0
1815 Male, age 53, unknown 5.6
1816 Male, age 51, unknown 4.8
2407 Male, age 75, both hemispheres 4.2
2316 Male, age 76, right hemisphere 3.3
Red nucleus
nTPM: 8.3
2227 Male, age 72, unknown 11.4
2769 Male, age 72, unknown 11.2
2503 Female, age 72, unknown 11.1
1954 Female, age 42, unknown 10.2
1821 Female, age 72, unknown 8.3
1865 Male, age 51, unknown 7.9
2725 Female, age 75, unknown 7.9
1904 Male, age 53, unknown 7.2
2785 Male, age 18, unknown 7.0
2588 Male, age 74, left hemisphere 6.1
2584 Male, age 75, left hemisphere 5.4
2823 Male, age 76, right hemisphere 5.3
Substantia nigra
nTPM: 7.6
2409 Female, age 72, unknown 11.0
2665 Male, age 74, both hemispheres 10.1
1851 Male, age 51, unknown 9.3
1941 Male, age 53, unknown 8.7
1916 Female, age 42, unknown 8.5
2590 Female, age 75, unknown 8.0
2699 Male, age 18, unknown 7.2
1889 Female, age 72, unknown 6.4
2583 Male, age 75, right hemisphere 5.2
2241 Male, age 72, unknown 2.0
Superior colliculus
nTPM: 6.5
1913 Female, age 42, unknown 8.5
1995 Male, age 72, unknown 8.2
2087 Female, age 72, unknown 7.9
2587 Male, age 74, left hemisphere 7.6
1839 Male, age 51, unknown 7.0
2261 Male, age 18, unknown 6.8
1796 Male, age 53, unknown 5.6
2668 Female, age 75, unknown 4.9
1895 Male, age 76, right hemisphere 4.6
2664 Male, age 75, both hemispheres 3.8
Ventral tegmental area
nTPM: 8.7
2410 Female, age 72, unknown 13.1
1915 Female, age 42, unknown 8.5
1942 Male, age 51, unknown 8.2
2223 Female, age 72, unknown 8.2
2218 Male, age 76, both hemispheres 7.5
2021 Male, age 53, unknown 6.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 258.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 258.7
Samples: 139

Max nTPM: 606.6
Min nTPM: 109.5
Std nTPM: 82.4
Median nTPM: 249.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 606.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 497.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 439.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 426.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 405.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 398.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 386.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 384.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 382.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 375.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 375.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 194.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 194.9
FF:10158-103A5 76 years, female 194.9

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