MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:130.2 nTPM
HPA Brain:137.9 nTPM
GTEx:130.2 nTPM
FANTOM5:85.7 Scaled Tags Per Million
Pig:61.5 nTPM
Mouse:38.6 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 137.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.4
2411 Female, age 72, unknown 92.9
2219 Male, age 76, both hemispheres 67.0
1833 Male, age 53, unknown 58.4
1870 Female, age 42, unknown 56.6
2586 Male, age 75, left hemisphere 52.4
1830 Male, age 51, unknown 47.7
2666 Male, age 74, left hemisphere 31.2
2828 Female, age 72, unknown 27.9
1827 Male, age 72, unknown 27.4
2019 Male, age 18, unknown 11.9
Dorsal raphe nucleus
nTPM: 113.3
2047 Male, age 72, unknown 182.9
2298 Female, age 72, unknown 148.3
2750 Male, age 76, both hemispheres 94.9
1828 Male, age 53, unknown 78.9
2016 Female, age 72, unknown 61.8
Inferior colliculus
nTPM: 37.2
2849 Male, age 72, unknown 43.6
2097 Female, age 72, unknown 40.6
1890 Male, age 53, unknown 39.8
1848 Female, age 42, unknown 24.9
Median raphe nucleus
nTPM: 121.2
2220 Male, age 76, midline 121.2
Periaquaductal grey, anterior
nTPM: 43.9
1947 Male, age 18, unknown 48.0
1795 Male, age 51, unknown 46.7
2502 Female, age 75, unknown 37.0
Periaquaductal grey, dorsal
nTPM: 51.6
1840 Male, age 53, unknown 69.0
2850 Male, age 76, both hemispheres 62.8
2464 Female, age 72, unknown 50.2
1831 Male, age 72, unknown 24.1
Periaquaductal grey, lateral
nTPM: 39.7
2053 Male, age 18, unknown 48.4
2140 Male, age 76, both hemispheres 40.4
2272 Male, age 74, both hemispheres 30.2
Pretectal area
nTPM: 28.7
2825 Male, age 18, unknown 94.9
2224 Female, age 72, unknown 92.2
2667 Female, age 75, unknown 26.4
2273 Male, age 74, both hemispheres 19.8
2407 Male, age 75, both hemispheres 19.7
2316 Male, age 76, right hemisphere 17.8
1944 Female, age 72, unknown 11.2
2007 Male, age 72, unknown 9.0
1815 Male, age 53, unknown 8.7
1817 Female, age 42, unknown 8.4
1816 Male, age 51, unknown 6.9
Red nucleus
nTPM: 38.6
2584 Male, age 75, left hemisphere 65.8
1821 Female, age 72, unknown 46.9
2227 Male, age 72, unknown 46.9
1954 Female, age 42, unknown 46.2
1904 Male, age 53, unknown 46.1
2769 Male, age 72, unknown 45.9
2725 Female, age 75, unknown 34.7
1865 Male, age 51, unknown 32.4
2503 Female, age 72, unknown 30.9
2588 Male, age 74, left hemisphere 29.3
2823 Male, age 76, right hemisphere 28.0
2785 Male, age 18, unknown 10.8
Substantia nigra
nTPM: 137.9
1916 Female, age 42, unknown 235.5
2699 Male, age 18, unknown 216.5
1851 Male, age 51, unknown 202.2
2241 Male, age 72, unknown 189.2
2665 Male, age 74, both hemispheres 125.1
2409 Female, age 72, unknown 122.9
1941 Male, age 53, unknown 93.5
2583 Male, age 75, right hemisphere 79.2
2590 Female, age 75, unknown 64.6
1889 Female, age 72, unknown 50.4
Superior colliculus
nTPM: 25.7
2668 Female, age 75, unknown 40.7
1839 Male, age 51, unknown 35.4
1796 Male, age 53, unknown 33.3
2587 Male, age 74, left hemisphere 29.5
1995 Male, age 72, unknown 26.6
2261 Male, age 18, unknown 21.4
2664 Male, age 75, both hemispheres 19.9
1913 Female, age 42, unknown 19.2
1895 Male, age 76, right hemisphere 18.1
2087 Female, age 72, unknown 13.1
Ventral tegmental area
nTPM: 114.0
1915 Female, age 42, unknown 166.6
2410 Female, age 72, unknown 131.4
2218 Male, age 76, both hemispheres 107.2
1942 Male, age 51, unknown 104.5
2021 Male, age 53, unknown 102.8
2223 Female, age 72, unknown 71.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 130.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 130.2
Samples: 139

Max nTPM: 780.8
Min nTPM: 17.6
Std nTPM: 103.1
Median nTPM: 102.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 780.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 494.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 449.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 382.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 371.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 342.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 320.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 288.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 286.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 286.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 278.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.7
FF:10158-103A5 76 years, female 85.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.5
Samples: 4

Max nTPM: 94.6
Min nTPM: 9.2
Sample A Female 91.7
Sample B Female 50.4
Sample C Male 94.6
Sample D Male 9.2
Midbrain
nTPM: 31.8
Samples: 4

Max nTPM: 54.3
Min nTPM: 10.0
Sample A Female 11.5
Sample B Female 54.3
Sample C Male 10.0
Sample D Male 51.5
Periaqueductal gray
nTPM: 53.7
Samples: 3

Max nTPM: 89.5
Min nTPM: 35.7
Sample B Female 35.7
Sample C Male 89.5
Sample D Male 36.0
Superior colliculi
nTPM: 21.7
Samples: 4

Max nTPM: 38.3
Min nTPM: 4.3
Sample A Female 38.3
Sample B Female 32.0
Sample C Male 4.3
Sample D Male 12.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.7
Samples: 4

Max nTPM: 43.7
Min nTPM: 29.6
Sample A Male 40.8
Sample B Male 40.5
Sample C Female 29.6
Sample D Female 43.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
75080750 Antisense, RP_060412_04_G11, Mouse strain C57BL/6J (56 days, male) 0.9
79762714 Antisense, RP_071204_04_D12, Mouse strain C57BL/6J (56 days, male) 0.6

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