MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.6 nTPM
HPA Brain:72.3 nTPM
GTEx:71.6 nTPM
FANTOM5:118.0 Scaled Tags Per Million
Pig:111.7 nTPM
Mouse:334.7 nTPM
Allen mouse:15.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.5
2019 Male, age 18, unknown 86.3
1870 Female, age 42, unknown 71.3
2666 Male, age 74, left hemisphere 70.1
2586 Male, age 75, left hemisphere 68.3
2411 Female, age 72, unknown 66.3
1833 Male, age 53, unknown 66.2
1827 Male, age 72, unknown 65.7
1830 Male, age 51, unknown 62.9
2828 Female, age 72, unknown 58.8
2219 Male, age 76, both hemispheres 49.2
Dorsal raphe nucleus
nTPM: 68.9
2298 Female, age 72, unknown 72.3
2750 Male, age 76, both hemispheres 72.0
1828 Male, age 53, unknown 71.2
2047 Male, age 72, unknown 66.4
2016 Female, age 72, unknown 62.7
Inferior colliculus
nTPM: 65.6
2097 Female, age 72, unknown 69.3
1890 Male, age 53, unknown 69.2
1848 Female, age 42, unknown 64.5
2849 Male, age 72, unknown 59.5
Median raphe nucleus
nTPM: 63.3
2220 Male, age 76, midline 63.3
Periaquaductal grey, anterior
nTPM: 67.0
1947 Male, age 18, unknown 72.0
2502 Female, age 75, unknown 70.1
1795 Male, age 51, unknown 59.0
Periaquaductal grey, dorsal
nTPM: 59.0
2850 Male, age 76, both hemispheres 66.4
1840 Male, age 53, unknown 60.4
2464 Female, age 72, unknown 58.0
1831 Male, age 72, unknown 51.1
Periaquaductal grey, lateral
nTPM: 60.7
2140 Male, age 76, both hemispheres 61.3
2053 Male, age 18, unknown 60.7
2272 Male, age 74, both hemispheres 59.9
Pretectal area
nTPM: 70.9
2007 Male, age 72, unknown 87.4
1817 Female, age 42, unknown 86.0
1816 Male, age 51, unknown 79.1
1815 Male, age 53, unknown 77.1
2667 Female, age 75, unknown 73.9
1944 Female, age 72, unknown 71.6
2273 Male, age 74, both hemispheres 65.1
2316 Male, age 76, right hemisphere 62.7
2224 Female, age 72, unknown 62.1
2407 Male, age 75, both hemispheres 58.5
2825 Male, age 18, unknown 56.4
Red nucleus
nTPM: 72.3
1821 Female, age 72, unknown 92.3
1865 Male, age 51, unknown 83.5
1904 Male, age 53, unknown 76.6
1954 Female, age 42, unknown 72.4
2785 Male, age 18, unknown 72.1
2725 Female, age 75, unknown 70.0
2588 Male, age 74, left hemisphere 69.8
2227 Male, age 72, unknown 69.1
2503 Female, age 72, unknown 68.8
2769 Male, age 72, unknown 68.3
2823 Male, age 76, right hemisphere 67.3
2584 Male, age 75, left hemisphere 57.5
Substantia nigra
nTPM: 71.7
2409 Female, age 72, unknown 88.0
2241 Male, age 72, unknown 83.9
1916 Female, age 42, unknown 77.7
1889 Female, age 72, unknown 76.3
1851 Male, age 51, unknown 72.3
1941 Male, age 53, unknown 69.0
2665 Male, age 74, both hemispheres 65.2
2699 Male, age 18, unknown 62.6
2590 Female, age 75, unknown 62.3
2583 Male, age 75, right hemisphere 59.4
Superior colliculus
nTPM: 65.5
1895 Male, age 76, right hemisphere 72.5
2587 Male, age 74, left hemisphere 69.7
2668 Female, age 75, unknown 69.3
1839 Male, age 51, unknown 66.0
2087 Female, age 72, unknown 66.0
1913 Female, age 42, unknown 65.2
2261 Male, age 18, unknown 65.1
1995 Male, age 72, unknown 63.8
1796 Male, age 53, unknown 59.3
2664 Male, age 75, both hemispheres 57.8
Ventral tegmental area
nTPM: 66.3
2410 Female, age 72, unknown 79.6
1915 Female, age 42, unknown 69.6
2223 Female, age 72, unknown 68.3
2218 Male, age 76, both hemispheres 65.9
1942 Male, age 51, unknown 58.0
2021 Male, age 53, unknown 56.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 71.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.6
Samples: 139

Max nTPM: 119.8
Min nTPM: 40.7
Std nTPM: 13.3
Median nTPM: 69.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 119.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 109.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 101.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 99.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 97.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 96.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 95.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 95.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 94.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 94.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 93.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 118.0
FF:10158-103A5 76 years, female 118.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 111.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 91.4
Samples: 4

Max nTPM: 120.5
Min nTPM: 67.5
Sample A Female 120.5
Sample B Female 67.5
Sample C Male 108.2
Sample D Male 69.5
Midbrain
nTPM: 106.9
Samples: 4

Max nTPM: 142.6
Min nTPM: 79.5
Sample A Female 103.1
Sample B Female 79.5
Sample C Male 142.6
Sample D Male 102.4
Periaqueductal gray
nTPM: 81.1
Samples: 3

Max nTPM: 94.3
Min nTPM: 73.6
Sample B Female 75.3
Sample C Male 94.3
Sample D Male 73.6
Superior colliculi
nTPM: 111.7
Samples: 4

Max nTPM: 133.5
Min nTPM: 84.7
Sample A Female 121.2
Sample B Female 84.7
Sample C Male 133.5
Sample D Male 107.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 334.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 334.7
Samples: 4

Max nTPM: 340.8
Min nTPM: 326.8
Sample A Male 332.8
Sample B Male 340.8
Sample C Female 338.2
Sample D Female 326.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.5
71836805 Antisense, RP_051017_02_A10, Mouse strain C57BL/6J (56 days, male) 19.2
393213 Antisense, RP_040804_02_E01, Mouse strain C57BL/6J (56 days, male) 11.7

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