MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.4 nTPM
HPA Brain:8.2 nTPM
GTEx:18.4 nTPM
FANTOM5:36.3 Scaled Tags Per Million
Pig:9.9 nTPM
Mouse:22.8 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.4
1833 Male, age 53, unknown 8.0
2219 Male, age 76, both hemispheres 7.3
1827 Male, age 72, unknown 6.6
1830 Male, age 51, unknown 6.6
2411 Female, age 72, unknown 6.5
2666 Male, age 74, left hemisphere 6.4
2828 Female, age 72, unknown 6.3
2586 Male, age 75, left hemisphere 6.1
1870 Female, age 42, unknown 5.6
2019 Male, age 18, unknown 4.7
Dorsal raphe nucleus
nTPM: 8.1
2047 Male, age 72, unknown 10.9
2750 Male, age 76, both hemispheres 7.7
2016 Female, age 72, unknown 7.6
1828 Male, age 53, unknown 7.1
2298 Female, age 72, unknown 6.9
Inferior colliculus
nTPM: 8.0
1848 Female, age 42, unknown 9.4
2849 Male, age 72, unknown 8.6
1890 Male, age 53, unknown 7.6
2097 Female, age 72, unknown 6.6
Median raphe nucleus
nTPM: 8.2
2220 Male, age 76, midline 8.2
Periaquaductal grey, anterior
nTPM: 7.1
1947 Male, age 18, unknown 8.4
2502 Female, age 75, unknown 6.6
1795 Male, age 51, unknown 6.4
Periaquaductal grey, dorsal
nTPM: 7.6
2850 Male, age 76, both hemispheres 8.7
2464 Female, age 72, unknown 7.9
1840 Male, age 53, unknown 7.2
1831 Male, age 72, unknown 6.5
Periaquaductal grey, lateral
nTPM: 7.5
2140 Male, age 76, both hemispheres 8.9
2053 Male, age 18, unknown 7.5
2272 Male, age 74, both hemispheres 6.2
Pretectal area
nTPM: 6.3
2667 Female, age 75, unknown 7.9
1816 Male, age 51, unknown 6.8
1815 Male, age 53, unknown 6.7
2273 Male, age 74, both hemispheres 6.7
2825 Male, age 18, unknown 6.6
1817 Female, age 42, unknown 6.3
2224 Female, age 72, unknown 6.2
2407 Male, age 75, both hemispheres 6.0
2316 Male, age 76, right hemisphere 5.7
1944 Female, age 72, unknown 5.1
2007 Male, age 72, unknown 5.1
Red nucleus
nTPM: 7.5
2227 Male, age 72, unknown 9.2
1821 Female, age 72, unknown 9.1
2769 Male, age 72, unknown 8.7
1904 Male, age 53, unknown 8.6
2725 Female, age 75, unknown 8.4
1954 Female, age 42, unknown 8.2
2823 Male, age 76, right hemisphere 7.8
2588 Male, age 74, left hemisphere 6.9
2503 Female, age 72, unknown 6.2
2584 Male, age 75, left hemisphere 5.8
1865 Male, age 51, unknown 5.6
2785 Male, age 18, unknown 5.6
Substantia nigra
nTPM: 7.8
1916 Female, age 42, unknown 12.3
2699 Male, age 18, unknown 11.6
1851 Male, age 51, unknown 10.6
1889 Female, age 72, unknown 7.2
2665 Male, age 74, both hemispheres 7.1
2409 Female, age 72, unknown 6.9
2583 Male, age 75, right hemisphere 6.8
2590 Female, age 75, unknown 5.8
1941 Male, age 53, unknown 5.3
2241 Male, age 72, unknown 4.8
Superior colliculus
nTPM: 6.7
1895 Male, age 76, right hemisphere 8.8
1796 Male, age 53, unknown 7.7
2587 Male, age 74, left hemisphere 7.5
1913 Female, age 42, unknown 6.7
2664 Male, age 75, both hemispheres 6.5
2668 Female, age 75, unknown 6.5
1995 Male, age 72, unknown 6.3
1839 Male, age 51, unknown 6.0
2261 Male, age 18, unknown 6.0
2087 Female, age 72, unknown 5.5
Ventral tegmental area
nTPM: 8.2
2218 Male, age 76, both hemispheres 9.2
2410 Female, age 72, unknown 9.1
1942 Male, age 51, unknown 8.3
1915 Female, age 42, unknown 8.0
2021 Male, age 53, unknown 7.8
2223 Female, age 72, unknown 7.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.4
Samples: 139

Max nTPM: 54.3
Min nTPM: 5.3
Std nTPM: 7.8
Median nTPM: 16.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 54.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 38.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 36.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 35.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 35.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 34.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 33.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 32.9
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 32.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 32.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 32.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.3
FF:10158-103A5 76 years, female 36.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.8
Samples: 4

Max nTPM: 12.0
Min nTPM: 8.0
Sample A Female 8.0
Sample B Female 9.2
Sample C Male 9.8
Sample D Male 12.0
Midbrain
nTPM: 9.0
Samples: 4

Max nTPM: 10.0
Min nTPM: 7.6
Sample A Female 8.7
Sample B Female 7.6
Sample C Male 10.0
Sample D Male 9.8
Periaqueductal gray
nTPM: 9.9
Samples: 3

Max nTPM: 10.4
Min nTPM: 9.6
Sample B Female 9.6
Sample C Male 9.7
Sample D Male 10.4
Superior colliculi
nTPM: 7.9
Samples: 4

Max nTPM: 9.4
Min nTPM: 6.1
Sample A Female 6.9
Sample B Female 6.1
Sample C Male 9.1
Sample D Male 9.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.8
Samples: 4

Max nTPM: 26.2
Min nTPM: 19.6
Sample A Male 26.2
Sample B Male 23.8
Sample C Female 21.7
Sample D Female 19.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69202627 Antisense, RP_050324_04_A09, Mouse strain C57BL/6J (56 days, male) 0.3

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