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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
39.2
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 39.2
Samples: 152
Max nTPM: 101.9
Min nTPM: 20.3
Std nTPM: 10.6
Median nTPM: 38.7
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
101.9
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
68.4
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
66.0
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
61.8
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
61.2
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
59.9
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
58.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
54.5
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
54.4
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
54.0
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
53.8
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
52.7
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
52.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
51.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
51.6
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
51.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
50.9
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
50.3
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
50.3
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
49.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
49.9
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
49.3
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
48.9
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
48.3
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
47.9
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
47.8
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
47.7
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
47.5
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
47.3
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
46.9
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
46.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
46.8
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
46.4
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
46.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
46.0
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
46.0
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
45.9
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
45.5
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
45.2
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
44.9
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
44.3
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
44.3
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
43.7
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
43.6
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
43.6
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
43.5
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
43.2
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
43.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
42.5
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
42.2
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
42.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
42.0
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
42.0
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
42.0
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
41.9
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
41.6
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
41.4
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
40.9
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
40.8
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
40.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
40.4
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
40.4
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
40.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
40.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
40.1
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
40.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
40.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
39.8
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
39.6
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
39.4
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
39.4
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
39.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
39.3
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
39.1
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
39.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
38.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
38.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
38.5
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
38.4
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
38.4
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
38.2
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
38.1
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
37.4
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
36.9
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
36.3
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
36.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
36.2
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
36.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
36.0
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
35.9
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
35.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
35.8
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
35.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
35.5
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
35.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
34.9
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
34.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
34.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
34.3
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
34.0
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
33.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
33.7
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
33.6
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
33.4
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
33.4
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
32.3
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
32.0
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
31.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
31.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
31.4
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
31.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
31.3
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
30.8
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
30.6
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
30.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
30.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
30.6
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
30.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
30.3
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
29.9
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
29.9
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
29.6
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
29.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
29.4
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
29.3
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
29.3
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
29.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
28.8
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
28.8
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
28.4
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
28.4
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
28.3
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
28.3
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
28.2
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
28.1
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
28.0
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
27.5
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
27.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
27.5
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
27.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
27.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
27.0
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
27.0
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
26.9
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
26.8
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
25.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
25.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
25.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
24.7
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
23.8
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
22.3
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
20.3
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
93.9
Mouse sample
Sample description
nTPM
Amygdala nTPM: 94.0
Samples: 4
Max nTPM: 107.4
Min nTPM: 74.7
Sample A
Male
92.3
Sample B
Male
74.7
Sample C
Female
101.4
Sample D
Female
107.4
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
