MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.8 nTPM
HPA Brain:50.2 nTPM
GTEx:10.8 nTPM
FANTOM5:34.4 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.1
1870 Female, age 42, unknown 49.3
2411 Female, age 72, unknown 44.8
2019 Male, age 18, unknown 40.7
1833 Male, age 53, unknown 38.7
1830 Male, age 51, unknown 36.3
2586 Male, age 75, left hemisphere 36.2
1827 Male, age 72, unknown 34.8
2219 Male, age 76, both hemispheres 33.1
2666 Male, age 74, left hemisphere 32.3
2828 Female, age 72, unknown 25.2
Dorsal raphe nucleus
nTPM: 43.9
2298 Female, age 72, unknown 48.9
2016 Female, age 72, unknown 45.4
2750 Male, age 76, both hemispheres 45.4
1828 Male, age 53, unknown 44.9
2047 Male, age 72, unknown 34.9
Inferior colliculus
nTPM: 41.6
2097 Female, age 72, unknown 49.6
1890 Male, age 53, unknown 43.9
1848 Female, age 42, unknown 39.7
2849 Male, age 72, unknown 33.1
Median raphe nucleus
nTPM: 37.7
2220 Male, age 76, midline 37.7
Periaquaductal grey, anterior
nTPM: 38.4
1947 Male, age 18, unknown 43.6
2502 Female, age 75, unknown 40.0
1795 Male, age 51, unknown 31.5
Periaquaductal grey, dorsal
nTPM: 38.5
2464 Female, age 72, unknown 43.6
2850 Male, age 76, both hemispheres 39.1
1840 Male, age 53, unknown 38.3
1831 Male, age 72, unknown 33.1
Periaquaductal grey, lateral
nTPM: 28.3
2053 Male, age 18, unknown 36.2
2140 Male, age 76, both hemispheres 26.9
2272 Male, age 74, both hemispheres 21.8
Pretectal area
nTPM: 38.7
1817 Female, age 42, unknown 46.6
1815 Male, age 53, unknown 46.4
1944 Female, age 72, unknown 46.2
2007 Male, age 72, unknown 44.9
1816 Male, age 51, unknown 44.1
2224 Female, age 72, unknown 40.5
2667 Female, age 75, unknown 36.2
2825 Male, age 18, unknown 33.5
2316 Male, age 76, right hemisphere 31.0
2273 Male, age 74, both hemispheres 30.8
2407 Male, age 75, both hemispheres 25.6
Red nucleus
nTPM: 42.4
1821 Female, age 72, unknown 65.1
1954 Female, age 42, unknown 50.0
1904 Male, age 53, unknown 47.1
1865 Male, age 51, unknown 46.9
2503 Female, age 72, unknown 45.6
2823 Male, age 76, right hemisphere 45.2
2227 Male, age 72, unknown 40.7
2725 Female, age 75, unknown 40.5
2769 Male, age 72, unknown 40.2
2785 Male, age 18, unknown 35.9
2588 Male, age 74, left hemisphere 27.2
2584 Male, age 75, left hemisphere 23.9
Substantia nigra
nTPM: 50.2
2241 Male, age 72, unknown 73.8
2409 Female, age 72, unknown 66.1
1889 Female, age 72, unknown 54.6
1916 Female, age 42, unknown 53.1
1851 Male, age 51, unknown 52.1
2699 Male, age 18, unknown 45.2
1941 Male, age 53, unknown 43.5
2590 Female, age 75, unknown 38.8
2665 Male, age 74, both hemispheres 38.7
2583 Male, age 75, right hemisphere 36.6
Superior colliculus
nTPM: 37.5
2668 Female, age 75, unknown 47.2
1913 Female, age 42, unknown 46.6
2087 Female, age 72, unknown 41.0
2587 Male, age 74, left hemisphere 40.7
1995 Male, age 72, unknown 40.5
1895 Male, age 76, right hemisphere 37.7
1839 Male, age 51, unknown 32.3
1796 Male, age 53, unknown 31.5
2261 Male, age 18, unknown 31.3
2664 Male, age 75, both hemispheres 26.4
Ventral tegmental area
nTPM: 45.2
2410 Female, age 72, unknown 54.9
2223 Female, age 72, unknown 51.8
1915 Female, age 42, unknown 44.9
1942 Male, age 51, unknown 44.1
2218 Male, age 76, both hemispheres 39.4
2021 Male, age 53, unknown 36.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.8
Samples: 139

Max nTPM: 44.0
Min nTPM: 0.7
Std nTPM: 6.6
Median nTPM: 9.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 44.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 38.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 31.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 26.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 23.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 23.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 22.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 21.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 21.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 20.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 19.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.4
FF:10158-103A5 76 years, female 34.4

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