MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:102.6 nTPM
HPA Brain:105.5 nTPM
GTEx:102.6 nTPM
FANTOM5:9.2 Scaled Tags Per Million
Mouse:73.8 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 105.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.1
2219 Male, age 76, both hemispheres 116.9
2019 Male, age 18, unknown 75.2
2828 Female, age 72, unknown 71.7
1827 Male, age 72, unknown 69.3
2586 Male, age 75, left hemisphere 65.8
1870 Female, age 42, unknown 48.7
2411 Female, age 72, unknown 47.5
1833 Male, age 53, unknown 47.4
2666 Male, age 74, left hemisphere 44.5
1830 Male, age 51, unknown 44.2
Dorsal raphe nucleus
nTPM: 59.9
2047 Male, age 72, unknown 72.8
2298 Female, age 72, unknown 71.9
2750 Male, age 76, both hemispheres 68.2
1828 Male, age 53, unknown 58.9
2016 Female, age 72, unknown 27.9
Inferior colliculus
nTPM: 60.4
2849 Male, age 72, unknown 78.6
1848 Female, age 42, unknown 71.8
1890 Male, age 53, unknown 47.3
2097 Female, age 72, unknown 43.7
Median raphe nucleus
nTPM: 85.8
2220 Male, age 76, midline 85.8
Periaquaductal grey, anterior
nTPM: 59.0
2502 Female, age 75, unknown 84.1
1795 Male, age 51, unknown 70.3
1947 Male, age 18, unknown 22.7
Periaquaductal grey, dorsal
nTPM: 66.6
1840 Male, age 53, unknown 77.6
2464 Female, age 72, unknown 67.0
2850 Male, age 76, both hemispheres 66.6
1831 Male, age 72, unknown 55.3
Periaquaductal grey, lateral
nTPM: 42.3
2140 Male, age 76, both hemispheres 53.8
2053 Male, age 18, unknown 37.0
2272 Male, age 74, both hemispheres 36.0
Pretectal area
nTPM: 105.5
1944 Female, age 72, unknown 190.2
1816 Male, age 51, unknown 169.4
2667 Female, age 75, unknown 160.6
2007 Male, age 72, unknown 152.2
1815 Male, age 53, unknown 142.6
1817 Female, age 42, unknown 133.7
2224 Female, age 72, unknown 58.2
2825 Male, age 18, unknown 44.4
2407 Male, age 75, both hemispheres 43.9
2316 Male, age 76, right hemisphere 37.2
2273 Male, age 74, both hemispheres 28.1
Red nucleus
nTPM: 26.3
2785 Male, age 18, unknown 91.9
2588 Male, age 74, left hemisphere 53.0
2584 Male, age 75, left hemisphere 39.7
2503 Female, age 72, unknown 18.6
2769 Male, age 72, unknown 16.7
2725 Female, age 75, unknown 15.8
1904 Male, age 53, unknown 14.6
2227 Male, age 72, unknown 14.4
2823 Male, age 76, right hemisphere 13.4
1954 Female, age 42, unknown 13.1
1821 Female, age 72, unknown 12.6
1865 Male, age 51, unknown 11.5
Substantia nigra
nTPM: 82.9
2665 Male, age 74, both hemispheres 161.7
1889 Female, age 72, unknown 111.4
1851 Male, age 51, unknown 111.0
1941 Male, age 53, unknown 93.5
2409 Female, age 72, unknown 81.0
1916 Female, age 42, unknown 68.5
2699 Male, age 18, unknown 67.7
2583 Male, age 75, right hemisphere 49.3
2241 Male, age 72, unknown 47.2
2590 Female, age 75, unknown 37.9
Superior colliculus
nTPM: 74.5
2087 Female, age 72, unknown 128.8
1796 Male, age 53, unknown 86.8
1895 Male, age 76, right hemisphere 86.8
1913 Female, age 42, unknown 83.6
2261 Male, age 18, unknown 70.5
1995 Male, age 72, unknown 66.6
2668 Female, age 75, unknown 59.8
2664 Male, age 75, both hemispheres 57.9
1839 Male, age 51, unknown 54.6
2587 Male, age 74, left hemisphere 49.2
Ventral tegmental area
nTPM: 68.6
2218 Male, age 76, both hemispheres 106.2
2223 Female, age 72, unknown 72.7
1915 Female, age 42, unknown 70.5
2410 Female, age 72, unknown 63.3
1942 Male, age 51, unknown 51.5
2021 Male, age 53, unknown 47.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 102.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 102.6
Samples: 139

Max nTPM: 331.7
Min nTPM: 16.9
Std nTPM: 60.3
Median nTPM: 93.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 331.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 306.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 283.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 250.6
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 224.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 217.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 205.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 203.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 197.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 194.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 192.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.2
FF:10158-103A5 76 years, female 9.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 73.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.8
Samples: 4

Max nTPM: 84.8
Min nTPM: 63.3
Sample A Male 84.8
Sample B Male 63.3
Sample C Female 70.1
Sample D Female 77.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
73592536 Antisense, RP_051017_01_E12, Mouse strain C57BL/6J (56 days, male) 4.2
69116590 Antisense, RP_050317_02_H10, Mouse strain C57BL/6J (56 days, male) 4.1

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