HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:19.0 nTPM
HPA Brain:4.4 nTPM
GTEx:19.0 nTPM
FANTOM5:31.7 Scaled Tags Per Million
Pig:44.3 nTPM
Mouse:47.5 nTPM
Allen mouse:4.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042667Antibody HPA048128
Glial cells Not detectedLow
Neuronal cells Not detectedMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 4.4
Sample id Sample description nTPM
Hippocampus
nTPM: 3.5
2529 Female, age 94, left hemisphere 6.8
2621 Female, age 67, right hemisphere 5.9
1898 Male, age 80, left hemisphere 3.9
1911 Female, age 85, right hemisphere 2.8
1855 Male, age 76, left hemisphere 1.6
2148 Female, age 91, left hemisphere 0.0
Dentate gyrus
nTPM: 2.8
2528 Male, age 74, both hemispheres 5.8
2530 Female, age 94, left hemisphere 4.4
2246 Female, age 85, both hemispheres 2.8
2010 Male, age 76, both hemispheres 1.6
2531 Female, age 67, both hemispheres 1.2
1927 Female, age 91, both hemispheres 0.7
Entorhinal gyrus
nTPM: 3.0
2613 Female, age 94, left hemisphere 7.0
2686 Male, age 75, right hemisphere 3.1
1938 Female, age 85, left hemisphere 2.8
2764 Male, age 80, right hemisphere 2.1
2117 Female, age 91, right hemisphere 1.7
1787 Male, age 76, left hemisphere 1.6
Hippocampus, CA1
nTPM: 4.3
2749 Male, age 80, left hemisphere 8.4
2527 Male, age 74, both hemispheres 4.7
2045 Male, age 76, both hemispheres 3.3
1873 Female, age 85, both hemispheres 2.8
2082 Female, age 91, right hemisphere 2.2
Hippocampus, CA2
nTPM: 2.6
1963 Male, age 80, left hemisphere 5.2
2249 Male, age 74, both hemispheres 5.1
1940 Female, age 85, left hemisphere 2.8
1892 Male, age 76, both hemispheres 2.2
2437 Female, age 94, left hemisphere 0.2
2113 Female, age 91, right hemisphere 0.0
Hippocampus, CA3
nTPM: 3.0
2137 Male, age 80, left hemisphere 7.1
1867 Male, age 76, both hemispheres 3.1
1891 Female, age 85, both hemispheres 2.8
2436 Male, age 74, both hemispheres 2.3
2861 Female, age 67, both hemispheres 1.9
2620 Female, age 94, left hemisphere 1.0
Parahippocampal cortex
nTPM: 3.3
2018 Male, age 76, both hemispheres 8.1
2250 Female, age 67, right hemisphere 6.4
2532 Female, age 72, left hemisphere 4.3
1990 Female, age 91, right hemisphere 4.0
1850 Male, age 80, both hemispheres 2.9
1933 Female, age 85, both hemispheres 2.8
2245 Female, age 91, both hemispheres 2.0
2622 Female, age 67, right hemisphere 1.6
2692 Male, age 74, both hemispheres 0.4
2693 Female, age 94, both hemispheres 0.3
Perirhinal gyrus
nTPM: 4.4
1794 Male, age 80, right hemisphere 7.1
2521 Female, age 94, right hemisphere 5.9
1847 Female, age 91, left hemisphere 4.7
1841 Female, age 85, right hemisphere 2.8
2848 Male, age 76, right hemisphere 1.6
Subiculum
nTPM: 2.8
2438 Female, age 94, left hemisphere 5.1
2042 Male, age 76, both hemispheres 3.8
2619 Male, age 74, both hemispheres 3.2
1977 Female, age 85, both hemispheres 2.8
1901 Male, age 80, both hemispheres 1.8
2729 Female, age 91, right hemisphere 0.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 19.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.0
Samples: 197

Max nTPM: 31.4
Min nTPM: 8.4
Std nTPM: 3.8
Median nTPM: 18.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 31.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 30.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 28.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 27.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 26.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 25.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 25.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 25.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 25.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 25.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 25.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 31.7
FF:10153-102I9 76 years, female 36.5
FF:10169-103B7 60 years, female 27.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 44.3
Pig sample Sample description nTPM
Subiculum
nTPM: 37.9
Samples: 4

Max nTPM: 44.5
Min nTPM: 33.8
Sample A Female 44.5
Sample B Female 35.5
Sample C Male 37.8
Sample D Male 33.8
Dorsal hippocampus
nTPM: 44.3
Samples: 4

Max nTPM: 56.1
Min nTPM: 35.1
Sample A Female 56.1
Sample B Female 44.0
Sample C Male 42.0
Sample D Male 35.1
Entorhinal cortex
nTPM: 38.1
Samples: 4

Max nTPM: 40.1
Min nTPM: 35.9
Sample A Female 40.1
Sample B Female 37.9
Sample C Male 38.6
Sample D Male 35.9
Ventral hippocampus
nTPM: 42.2
Samples: 4

Max nTPM: 51.7
Min nTPM: 30.9
Sample A Female 41.3
Sample B Female 30.9
Sample C Male 51.7
Sample D Male 44.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 47.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 44.5
Samples: 4

Max nTPM: 47.9
Min nTPM: 42.4
Sample A Male 42.4
Sample B Male 44.3
Sample C Female 43.3
Sample D Female 47.9
Hippocampal formation
nTPM: 47.5
Samples: 4

Max nTPM: 49.0
Min nTPM: 43.6
Sample A Male 43.6
Sample B Male 48.4
Sample C Female 49.0
Sample D Female 49.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.2
69174469 Antisense, RP_050329_02_D05, Mouse strain C57BL/6J (56 days, male) 4.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org