MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:131.9 nTPM
HPA Brain:63.4 nTPM
GTEx:131.9 nTPM
FANTOM5:50.5 Scaled Tags Per Million
Pig:202.7 nTPM
Mouse:3.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.6
2586 Male, age 75, left hemisphere 81.2
2019 Male, age 18, unknown 62.9
1833 Male, age 53, unknown 59.1
2828 Female, age 72, unknown 58.6
2411 Female, age 72, unknown 56.4
2219 Male, age 76, both hemispheres 55.2
1870 Female, age 42, unknown 52.2
1827 Male, age 72, unknown 50.6
1830 Male, age 51, unknown 46.2
2666 Male, age 74, left hemisphere 43.6
Dorsal raphe nucleus
nTPM: 52.2
2750 Male, age 76, both hemispheres 56.4
1828 Male, age 53, unknown 54.4
2016 Female, age 72, unknown 53.4
2047 Male, age 72, unknown 51.2
2298 Female, age 72, unknown 45.5
Inferior colliculus
nTPM: 57.3
1890 Male, age 53, unknown 62.9
2097 Female, age 72, unknown 62.1
2849 Male, age 72, unknown 52.6
1848 Female, age 42, unknown 51.5
Median raphe nucleus
nTPM: 57.1
2220 Male, age 76, midline 57.1
Periaquaductal grey, anterior
nTPM: 61.2
2502 Female, age 75, unknown 69.2
1947 Male, age 18, unknown 57.3
1795 Male, age 51, unknown 57.0
Periaquaductal grey, dorsal
nTPM: 48.0
1840 Male, age 53, unknown 50.8
2464 Female, age 72, unknown 48.7
2850 Male, age 76, both hemispheres 47.8
1831 Male, age 72, unknown 44.5
Periaquaductal grey, lateral
nTPM: 43.1
2140 Male, age 76, both hemispheres 47.2
2053 Male, age 18, unknown 45.3
2272 Male, age 74, both hemispheres 36.8
Pretectal area
nTPM: 56.0
2007 Male, age 72, unknown 72.4
1816 Male, age 51, unknown 70.0
1817 Female, age 42, unknown 68.7
1944 Female, age 72, unknown 60.7
1815 Male, age 53, unknown 52.9
2224 Female, age 72, unknown 52.4
2316 Male, age 76, right hemisphere 50.7
2825 Male, age 18, unknown 50.0
2667 Female, age 75, unknown 47.7
2273 Male, age 74, both hemispheres 45.2
2407 Male, age 75, both hemispheres 44.7
Red nucleus
nTPM: 58.8
2503 Female, age 72, unknown 75.0
2227 Male, age 72, unknown 62.1
1904 Male, age 53, unknown 61.8
2769 Male, age 72, unknown 61.8
1821 Female, age 72, unknown 60.1
2785 Male, age 18, unknown 57.5
1865 Male, age 51, unknown 57.2
2823 Male, age 76, right hemisphere 55.5
1954 Female, age 42, unknown 54.3
2588 Male, age 74, left hemisphere 54.1
2725 Female, age 75, unknown 52.9
2584 Male, age 75, left hemisphere 52.8
Substantia nigra
nTPM: 63.4
1916 Female, age 42, unknown 74.1
1851 Male, age 51, unknown 73.8
2665 Male, age 74, both hemispheres 73.7
2699 Male, age 18, unknown 66.2
2583 Male, age 75, right hemisphere 64.3
2409 Female, age 72, unknown 58.8
1941 Male, age 53, unknown 57.6
2590 Female, age 75, unknown 56.3
1889 Female, age 72, unknown 55.4
2241 Male, age 72, unknown 54.3
Superior colliculus
nTPM: 54.2
2668 Female, age 75, unknown 67.7
2664 Male, age 75, both hemispheres 65.5
1796 Male, age 53, unknown 57.8
1995 Male, age 72, unknown 55.3
1913 Female, age 42, unknown 51.5
2261 Male, age 18, unknown 51.3
2587 Male, age 74, left hemisphere 51.0
1839 Male, age 51, unknown 48.1
1895 Male, age 76, right hemisphere 47.4
2087 Female, age 72, unknown 46.4
Ventral tegmental area
nTPM: 57.8
1915 Female, age 42, unknown 69.4
2223 Female, age 72, unknown 67.1
1942 Male, age 51, unknown 56.7
2218 Male, age 76, both hemispheres 55.8
2410 Female, age 72, unknown 53.5
2021 Male, age 53, unknown 44.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 131.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 131.9
Samples: 139

Max nTPM: 365.4
Min nTPM: 41.5
Std nTPM: 53.8
Median nTPM: 125.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 365.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 328.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 274.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 273.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 254.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 239.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 231.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 225.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 220.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 220.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 218.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.5
FF:10158-103A5 76 years, female 50.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 202.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 150.0
Samples: 4

Max nTPM: 229.3
Min nTPM: 110.5
Sample A Female 229.3
Sample B Female 131.3
Sample C Male 128.8
Sample D Male 110.5
Midbrain
nTPM: 185.9
Samples: 4

Max nTPM: 238.8
Min nTPM: 142.8
Sample A Female 238.8
Sample B Female 177.2
Sample C Male 184.7
Sample D Male 142.8
Periaqueductal gray
nTPM: 143.6
Samples: 3

Max nTPM: 155.4
Min nTPM: 122.6
Sample B Female 152.7
Sample C Male 155.4
Sample D Male 122.6
Superior colliculi
nTPM: 202.7
Samples: 4

Max nTPM: 271.0
Min nTPM: 153.4
Sample A Female 271.0
Sample B Female 153.4
Sample C Male 193.9
Sample D Male 192.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.9
Samples: 4

Max nTPM: 5.3
Min nTPM: 2.7
Sample A Male 4.3
Sample B Male 5.3
Sample C Female 2.7
Sample D Female 3.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71211290 Antisense, RP_050816_01_B04, Mouse strain C57BL/6J (56 days, male) 0.0

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