MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.3 nTPM
HPA Brain:11.5 nTPM
GTEx:12.3 nTPM
FANTOM5:20.3 Scaled Tags Per Million
Pig:49.1 nTPM
Mouse:16.2 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.3
1830 Male, age 51, unknown 11.8
2019 Male, age 18, unknown 11.8
1870 Female, age 42, unknown 11.0
1833 Male, age 53, unknown 10.5
2828 Female, age 72, unknown 10.5
2411 Female, age 72, unknown 10.2
1827 Male, age 72, unknown 10.0
2219 Male, age 76, both hemispheres 9.6
2586 Male, age 75, left hemisphere 8.9
2666 Male, age 74, left hemisphere 8.8
Dorsal raphe nucleus
nTPM: 10.6
2016 Female, age 72, unknown 12.2
2750 Male, age 76, both hemispheres 11.2
2298 Female, age 72, unknown 10.3
1828 Male, age 53, unknown 9.8
2047 Male, age 72, unknown 9.7
Inferior colliculus
nTPM: 9.9
2097 Female, age 72, unknown 10.5
1890 Male, age 53, unknown 10.1
1848 Female, age 42, unknown 10.0
2849 Male, age 72, unknown 9.2
Median raphe nucleus
nTPM: 10.5
2220 Male, age 76, midline 10.5
Periaquaductal grey, anterior
nTPM: 8.4
1947 Male, age 18, unknown 9.6
2502 Female, age 75, unknown 8.0
1795 Male, age 51, unknown 7.5
Periaquaductal grey, dorsal
nTPM: 9.5
2850 Male, age 76, both hemispheres 10.9
1831 Male, age 72, unknown 9.7
2464 Female, age 72, unknown 9.3
1840 Male, age 53, unknown 8.1
Periaquaductal grey, lateral
nTPM: 11.5
2272 Male, age 74, both hemispheres 12.1
2140 Male, age 76, both hemispheres 11.7
2053 Male, age 18, unknown 10.6
Pretectal area
nTPM: 9.9
2667 Female, age 75, unknown 11.9
2273 Male, age 74, both hemispheres 11.5
2407 Male, age 75, both hemispheres 11.5
1815 Male, age 53, unknown 10.2
2316 Male, age 76, right hemisphere 10.1
2825 Male, age 18, unknown 9.7
1816 Male, age 51, unknown 9.3
2007 Male, age 72, unknown 9.0
2224 Female, age 72, unknown 8.9
1944 Female, age 72, unknown 8.7
1817 Female, age 42, unknown 8.5
Red nucleus
nTPM: 10.8
2823 Male, age 76, right hemisphere 12.5
1904 Male, age 53, unknown 12.3
1954 Female, age 42, unknown 11.9
2769 Male, age 72, unknown 11.7
2588 Male, age 74, left hemisphere 11.4
2227 Male, age 72, unknown 11.3
1865 Male, age 51, unknown 10.9
2503 Female, age 72, unknown 10.3
1821 Female, age 72, unknown 10.2
2725 Female, age 75, unknown 9.2
2785 Male, age 18, unknown 8.9
2584 Male, age 75, left hemisphere 8.7
Substantia nigra
nTPM: 8.7
2409 Female, age 72, unknown 9.7
2583 Male, age 75, right hemisphere 9.6
2699 Male, age 18, unknown 9.6
2241 Male, age 72, unknown 8.6
1916 Female, age 42, unknown 8.5
2590 Female, age 75, unknown 8.5
1851 Male, age 51, unknown 8.4
1941 Male, age 53, unknown 8.3
2665 Male, age 74, both hemispheres 8.1
1889 Female, age 72, unknown 7.8
Superior colliculus
nTPM: 10.1
2664 Male, age 75, both hemispheres 12.1
1995 Male, age 72, unknown 11.4
1913 Female, age 42, unknown 11.2
1839 Male, age 51, unknown 10.3
2668 Female, age 75, unknown 10.3
1796 Male, age 53, unknown 9.8
1895 Male, age 76, right hemisphere 9.7
2261 Male, age 18, unknown 9.1
2587 Male, age 74, left hemisphere 8.8
2087 Female, age 72, unknown 8.4
Ventral tegmental area
nTPM: 9.5
2223 Female, age 72, unknown 11.5
2021 Male, age 53, unknown 10.4
1942 Male, age 51, unknown 9.6
2218 Male, age 76, both hemispheres 9.5
1915 Female, age 42, unknown 8.5
2410 Female, age 72, unknown 7.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.3
Samples: 139

Max nTPM: 29.2
Min nTPM: 5.7
Std nTPM: 3.4
Median nTPM: 11.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 29.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 26.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 21.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 20.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 19.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 18.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 18.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 17.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 17.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 17.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 16.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.3
FF:10158-103A5 76 years, female 20.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.3
Samples: 4

Max nTPM: 62.2
Min nTPM: 28.8
Sample A Female 62.2
Sample B Female 45.7
Sample C Male 28.8
Sample D Male 32.3
Midbrain
nTPM: 49.2
Samples: 4

Max nTPM: 68.2
Min nTPM: 36.4
Sample A Female 68.2
Sample B Female 40.1
Sample C Male 36.4
Sample D Male 51.9
Periaqueductal gray
nTPM: 46.6
Samples: 3

Max nTPM: 63.3
Min nTPM: 36.8
Sample B Female 36.8
Sample C Male 63.3
Sample D Male 39.6
Superior colliculi
nTPM: 39.3
Samples: 4

Max nTPM: 48.1
Min nTPM: 30.7
Sample A Female 47.0
Sample B Female 30.7
Sample C Male 48.1
Sample D Male 31.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.2
Samples: 4

Max nTPM: 17.1
Min nTPM: 14.5
Sample A Male 16.8
Sample B Male 16.2
Sample C Female 17.1
Sample D Female 14.5

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