MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.2 nTPM
HPA Brain:13.9 nTPM
GTEx:6.2 nTPM
FANTOM5:27.8 Scaled Tags Per Million
Pig:29.5 nTPM
Mouse:10.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.2
2586 Male, age 75, left hemisphere 15.2
1870 Female, age 42, unknown 14.3
2828 Female, age 72, unknown 13.9
2411 Female, age 72, unknown 13.8
1833 Male, age 53, unknown 13.4
1830 Male, age 51, unknown 13.1
2019 Male, age 18, unknown 13.0
2666 Male, age 74, left hemisphere 12.3
2219 Male, age 76, both hemispheres 11.4
1827 Male, age 72, unknown 11.3
Dorsal raphe nucleus
nTPM: 13.0
2750 Male, age 76, both hemispheres 14.3
2016 Female, age 72, unknown 13.4
2298 Female, age 72, unknown 13.0
1828 Male, age 53, unknown 12.5
2047 Male, age 72, unknown 11.9
Inferior colliculus
nTPM: 11.5
1890 Male, age 53, unknown 12.2
1848 Female, age 42, unknown 11.7
2097 Female, age 72, unknown 11.2
2849 Male, age 72, unknown 11.0
Median raphe nucleus
nTPM: 12.4
2220 Male, age 76, midline 12.4
Periaquaductal grey, anterior
nTPM: 12.7
2502 Female, age 75, unknown 13.1
1947 Male, age 18, unknown 12.9
1795 Male, age 51, unknown 12.1
Periaquaductal grey, dorsal
nTPM: 12.1
2850 Male, age 76, both hemispheres 13.3
2464 Female, age 72, unknown 12.3
1840 Male, age 53, unknown 11.7
1831 Male, age 72, unknown 11.3
Periaquaductal grey, lateral
nTPM: 12.7
2140 Male, age 76, both hemispheres 13.9
2272 Male, age 74, both hemispheres 12.3
2053 Male, age 18, unknown 11.9
Pretectal area
nTPM: 11.8
2273 Male, age 74, both hemispheres 12.9
1815 Male, age 53, unknown 12.8
1817 Female, age 42, unknown 12.5
2007 Male, age 72, unknown 12.2
2825 Male, age 18, unknown 12.2
2224 Female, age 72, unknown 11.6
2316 Male, age 76, right hemisphere 11.5
2407 Male, age 75, both hemispheres 11.2
1944 Female, age 72, unknown 11.1
2667 Female, age 75, unknown 11.1
1816 Male, age 51, unknown 10.9
Red nucleus
nTPM: 13.9
1904 Male, age 53, unknown 16.0
2227 Male, age 72, unknown 14.8
2769 Male, age 72, unknown 14.7
1865 Male, age 51, unknown 14.6
1821 Female, age 72, unknown 14.4
2785 Male, age 18, unknown 13.9
1954 Female, age 42, unknown 13.8
2503 Female, age 72, unknown 13.8
2588 Male, age 74, left hemisphere 13.6
2823 Male, age 76, right hemisphere 13.4
2584 Male, age 75, left hemisphere 11.8
2725 Female, age 75, unknown 11.7
Substantia nigra
nTPM: 12.1
2590 Female, age 75, unknown 13.1
1851 Male, age 51, unknown 12.9
2583 Male, age 75, right hemisphere 12.9
2241 Male, age 72, unknown 12.4
2699 Male, age 18, unknown 12.4
2409 Female, age 72, unknown 11.9
1916 Female, age 42, unknown 11.7
1889 Female, age 72, unknown 11.4
2665 Male, age 74, both hemispheres 11.4
1941 Male, age 53, unknown 10.5
Superior colliculus
nTPM: 12.2
1995 Male, age 72, unknown 14.3
1913 Female, age 42, unknown 14.0
2668 Female, age 75, unknown 13.5
1839 Male, age 51, unknown 12.2
2261 Male, age 18, unknown 12.0
2664 Male, age 75, both hemispheres 11.6
2587 Male, age 74, left hemisphere 11.2
1895 Male, age 76, right hemisphere 11.1
1796 Male, age 53, unknown 10.9
2087 Female, age 72, unknown 10.7
Ventral tegmental area
nTPM: 12.7
2223 Female, age 72, unknown 13.8
2410 Female, age 72, unknown 13.1
2021 Male, age 53, unknown 12.7
1942 Male, age 51, unknown 12.5
2218 Male, age 76, both hemispheres 12.3
1915 Female, age 42, unknown 11.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.2
Samples: 139

Max nTPM: 15.8
Min nTPM: 2.6
Std nTPM: 1.9
Median nTPM: 5.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 15.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 11.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 11.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 10.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 10.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 10.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 9.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 9.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 9.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 9.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 9.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.8
FF:10158-103A5 76 years, female 27.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.5
Samples: 4

Max nTPM: 40.1
Min nTPM: 14.9
Sample A Female 40.1
Sample B Female 25.3
Sample C Male 37.8
Sample D Male 14.9
Midbrain
nTPM: 28.2
Samples: 4

Max nTPM: 38.5
Min nTPM: 19.2
Sample A Female 19.2
Sample B Female 25.0
Sample C Male 38.5
Sample D Male 29.9
Periaqueductal gray
nTPM: 29.5
Samples: 3

Max nTPM: 36.9
Min nTPM: 25.0
Sample B Female 25.0
Sample C Male 36.9
Sample D Male 26.5
Superior colliculi
nTPM: 26.7
Samples: 4

Max nTPM: 31.7
Min nTPM: 22.2
Sample A Female 31.7
Sample B Female 22.2
Sample C Male 28.1
Sample D Male 24.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.2
Samples: 4

Max nTPM: 10.3
Min nTPM: 10.0
Sample A Male 10.3
Sample B Male 10.1
Sample C Female 10.0
Sample D Female 10.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68633074 Antisense, RP_050125_02_D04, Mouse strain C57BL/6J (56 days, male) 0.1

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