MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.4 nTPM
HPA Brain:31.6 nTPM
GTEx:24.4 nTPM
FANTOM5:30.5 Scaled Tags Per Million
Pig:20.1 nTPM
Mouse:47.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.9
2219 Male, age 76, both hemispheres 36.1
1833 Male, age 53, unknown 30.6
2411 Female, age 72, unknown 29.4
2666 Male, age 74, left hemisphere 28.9
2586 Male, age 75, left hemisphere 28.8
1830 Male, age 51, unknown 28.5
1870 Female, age 42, unknown 28.5
1827 Male, age 72, unknown 28.4
2019 Male, age 18, unknown 26.1
2828 Female, age 72, unknown 23.6
Dorsal raphe nucleus
nTPM: 30.9
2298 Female, age 72, unknown 32.7
2750 Male, age 76, both hemispheres 32.5
2047 Male, age 72, unknown 32.2
1828 Male, age 53, unknown 30.3
2016 Female, age 72, unknown 26.7
Inferior colliculus
nTPM: 29.0
1848 Female, age 42, unknown 30.5
2849 Male, age 72, unknown 29.1
2097 Female, age 72, unknown 28.7
1890 Male, age 53, unknown 27.7
Median raphe nucleus
nTPM: 31.6
2220 Male, age 76, midline 31.6
Periaquaductal grey, anterior
nTPM: 30.8
1947 Male, age 18, unknown 35.5
1795 Male, age 51, unknown 28.7
2502 Female, age 75, unknown 28.4
Periaquaductal grey, dorsal
nTPM: 24.5
2464 Female, age 72, unknown 27.8
1840 Male, age 53, unknown 26.5
1831 Male, age 72, unknown 22.5
2850 Male, age 76, both hemispheres 21.2
Periaquaductal grey, lateral
nTPM: 24.1
2272 Male, age 74, both hemispheres 26.3
2053 Male, age 18, unknown 25.0
2140 Male, age 76, both hemispheres 21.0
Pretectal area
nTPM: 28.0
2007 Male, age 72, unknown 33.6
1817 Female, age 42, unknown 32.8
1816 Male, age 51, unknown 31.7
2667 Female, age 75, unknown 28.7
2825 Male, age 18, unknown 28.3
2224 Female, age 72, unknown 28.2
1815 Male, age 53, unknown 27.0
1944 Female, age 72, unknown 26.5
2273 Male, age 74, both hemispheres 24.9
2407 Male, age 75, both hemispheres 23.8
2316 Male, age 76, right hemisphere 22.6
Red nucleus
nTPM: 28.0
1821 Female, age 72, unknown 34.2
2584 Male, age 75, left hemisphere 30.3
2227 Male, age 72, unknown 30.2
2725 Female, age 75, unknown 29.7
2588 Male, age 74, left hemisphere 28.8
1954 Female, age 42, unknown 28.3
2769 Male, age 72, unknown 27.9
2823 Male, age 76, right hemisphere 27.0
1865 Male, age 51, unknown 25.1
2785 Male, age 18, unknown 25.1
2503 Female, age 72, unknown 25.0
1904 Male, age 53, unknown 24.7
Substantia nigra
nTPM: 31.6
1916 Female, age 42, unknown 39.5
1941 Male, age 53, unknown 39.3
2241 Male, age 72, unknown 33.4
1889 Female, age 72, unknown 33.0
1851 Male, age 51, unknown 31.9
2665 Male, age 74, both hemispheres 30.1
2409 Female, age 72, unknown 27.7
2699 Male, age 18, unknown 27.3
2583 Male, age 75, right hemisphere 27.2
2590 Female, age 75, unknown 27.0
Superior colliculus
nTPM: 27.3
2261 Male, age 18, unknown 31.0
1895 Male, age 76, right hemisphere 30.9
2668 Female, age 75, unknown 30.8
1839 Male, age 51, unknown 30.4
2087 Female, age 72, unknown 28.8
2664 Male, age 75, both hemispheres 27.9
1796 Male, age 53, unknown 26.1
2587 Male, age 74, left hemisphere 25.8
1913 Female, age 42, unknown 20.8
1995 Male, age 72, unknown 20.0
Ventral tegmental area
nTPM: 30.3
2218 Male, age 76, both hemispheres 33.4
1915 Female, age 42, unknown 32.3
2410 Female, age 72, unknown 31.7
2223 Female, age 72, unknown 30.0
1942 Male, age 51, unknown 27.7
2021 Male, age 53, unknown 26.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.4
Samples: 139

Max nTPM: 61.7
Min nTPM: 11.3
Std nTPM: 8.9
Median nTPM: 21.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 61.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 52.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 50.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 48.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 46.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 45.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 44.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 41.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 38.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 37.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 37.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.5
FF:10158-103A5 76 years, female 30.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.1
Samples: 4

Max nTPM: 28.6
Min nTPM: 13.1
Sample A Female 28.6
Sample B Female 18.6
Sample C Male 19.9
Sample D Male 13.1
Midbrain
nTPM: 20.2
Samples: 4

Max nTPM: 22.3
Min nTPM: 18.4
Sample A Female 18.4
Sample B Female 22.3
Sample C Male 19.1
Sample D Male 20.9
Periaqueductal gray
nTPM: 19.2
Samples: 3

Max nTPM: 20.5
Min nTPM: 18.1
Sample B Female 18.9
Sample C Male 20.5
Sample D Male 18.1
Superior colliculi
nTPM: 20.1
Samples: 4

Max nTPM: 24.1
Min nTPM: 16.7
Sample A Female 24.1
Sample B Female 16.7
Sample C Male 20.3
Sample D Male 19.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 47.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.3
Samples: 4

Max nTPM: 47.7
Min nTPM: 45.9
Sample A Male 47.7
Sample B Male 47.7
Sample C Female 47.7
Sample D Female 45.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69608453 Antisense, RP_050426_04_B04, Mouse strain C57BL/6J (56 days, male) 0.1

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