MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:89.4 nTPM
HPA Brain:59.8 nTPM
GTEx:89.4 nTPM
FANTOM5:23.4 Scaled Tags Per Million
Pig:47.6 nTPM
Mouse:27.8 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.8
2586 Male, age 75, left hemisphere 92.5
2828 Female, age 72, unknown 68.1
2666 Male, age 74, left hemisphere 61.9
2019 Male, age 18, unknown 59.5
1827 Male, age 72, unknown 54.7
1830 Male, age 51, unknown 52.8
1833 Male, age 53, unknown 52.5
2411 Female, age 72, unknown 51.0
1870 Female, age 42, unknown 50.1
2219 Male, age 76, both hemispheres 34.9
Dorsal raphe nucleus
nTPM: 50.9
1828 Male, age 53, unknown 53.1
2298 Female, age 72, unknown 52.0
2750 Male, age 76, both hemispheres 50.3
2047 Male, age 72, unknown 49.9
2016 Female, age 72, unknown 49.3
Inferior colliculus
nTPM: 47.8
1890 Male, age 53, unknown 52.9
2849 Male, age 72, unknown 52.6
1848 Female, age 42, unknown 44.7
2097 Female, age 72, unknown 41.1
Median raphe nucleus
nTPM: 41.8
2220 Male, age 76, midline 41.8
Periaquaductal grey, anterior
nTPM: 51.6
1795 Male, age 51, unknown 57.2
2502 Female, age 75, unknown 50.1
1947 Male, age 18, unknown 47.5
Periaquaductal grey, dorsal
nTPM: 49.7
1831 Male, age 72, unknown 58.4
2850 Male, age 76, both hemispheres 49.4
1840 Male, age 53, unknown 46.2
2464 Female, age 72, unknown 44.6
Periaquaductal grey, lateral
nTPM: 42.9
2053 Male, age 18, unknown 49.5
2140 Male, age 76, both hemispheres 40.7
2272 Male, age 74, both hemispheres 38.4
Pretectal area
nTPM: 54.6
1815 Male, age 53, unknown 68.2
1817 Female, age 42, unknown 62.1
2407 Male, age 75, both hemispheres 61.7
2007 Male, age 72, unknown 61.1
1816 Male, age 51, unknown 60.2
2667 Female, age 75, unknown 57.4
1944 Female, age 72, unknown 56.4
2825 Male, age 18, unknown 49.2
2316 Male, age 76, right hemisphere 42.0
2273 Male, age 74, both hemispheres 41.1
2224 Female, age 72, unknown 40.7
Red nucleus
nTPM: 59.8
2588 Male, age 74, left hemisphere 70.5
1821 Female, age 72, unknown 65.5
2584 Male, age 75, left hemisphere 64.5
1865 Male, age 51, unknown 62.3
2769 Male, age 72, unknown 60.7
1954 Female, age 42, unknown 59.4
1904 Male, age 53, unknown 57.9
2503 Female, age 72, unknown 57.6
2823 Male, age 76, right hemisphere 56.9
2785 Male, age 18, unknown 55.9
2227 Male, age 72, unknown 55.3
2725 Female, age 75, unknown 51.1
Substantia nigra
nTPM: 56.9
2665 Male, age 74, both hemispheres 71.7
2583 Male, age 75, right hemisphere 62.0
1851 Male, age 51, unknown 61.9
2699 Male, age 18, unknown 60.6
1916 Female, age 42, unknown 59.1
2590 Female, age 75, unknown 56.8
1889 Female, age 72, unknown 55.2
2409 Female, age 72, unknown 50.9
1941 Male, age 53, unknown 50.3
2241 Male, age 72, unknown 40.7
Superior colliculus
nTPM: 56.1
2664 Male, age 75, both hemispheres 84.4
2668 Female, age 75, unknown 61.7
1995 Male, age 72, unknown 57.2
2587 Male, age 74, left hemisphere 53.8
2261 Male, age 18, unknown 52.9
1913 Female, age 42, unknown 51.8
1796 Male, age 53, unknown 51.7
1895 Male, age 76, right hemisphere 50.7
2087 Female, age 72, unknown 50.5
1839 Male, age 51, unknown 46.7
Ventral tegmental area
nTPM: 50.5
1915 Female, age 42, unknown 57.9
2223 Female, age 72, unknown 56.7
2410 Female, age 72, unknown 50.8
2021 Male, age 53, unknown 48.1
2218 Male, age 76, both hemispheres 45.0
1942 Male, age 51, unknown 44.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 89.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 89.4
Samples: 139

Max nTPM: 198.2
Min nTPM: 35.4
Std nTPM: 29.7
Median nTPM: 84.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 198.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 196.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 180.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 165.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 143.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 141.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 141.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 140.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 139.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 136.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 136.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.4
FF:10158-103A5 76 years, female 23.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.6
Samples: 4

Max nTPM: 57.7
Min nTPM: 41.9
Sample A Female 57.7
Sample B Female 41.9
Sample C Male 45.3
Sample D Male 45.6
Midbrain
nTPM: 43.5
Samples: 4

Max nTPM: 62.3
Min nTPM: 32.2
Sample A Female 62.3
Sample B Female 45.3
Sample C Male 34.0
Sample D Male 32.2
Periaqueductal gray
nTPM: 40.8
Samples: 3

Max nTPM: 44.1
Min nTPM: 35.9
Sample B Female 35.9
Sample C Male 44.1
Sample D Male 42.5
Superior colliculi
nTPM: 46.5
Samples: 4

Max nTPM: 53.5
Min nTPM: 41.8
Sample A Female 48.0
Sample B Female 53.5
Sample C Male 42.6
Sample D Male 41.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.8
Samples: 4

Max nTPM: 31.2
Min nTPM: 25.3
Sample A Male 31.2
Sample B Male 25.3
Sample C Female 25.9
Sample D Female 28.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
69080018 Antisense, RP_050324_01_D08, Mouse strain C57BL/6J (56 days, male) 5.2

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