MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:231.9 nTPM
HPA Brain:195.0 nTPM
GTEx:231.9 nTPM
FANTOM5:179.2 Scaled Tags Per Million
Mouse:32.0 nTPM
Allen mouse:7.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 195.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 186.9
2586 Male, age 75, left hemisphere 319.7
2828 Female, age 72, unknown 274.3
2666 Male, age 74, left hemisphere 229.3
2219 Male, age 76, both hemispheres 225.8
1827 Male, age 72, unknown 166.5
1870 Female, age 42, unknown 162.4
1833 Male, age 53, unknown 140.8
1830 Male, age 51, unknown 132.5
2411 Female, age 72, unknown 126.6
2019 Male, age 18, unknown 90.9
Dorsal raphe nucleus
nTPM: 160.5
2016 Female, age 72, unknown 190.6
2047 Male, age 72, unknown 188.2
1828 Male, age 53, unknown 167.5
2298 Female, age 72, unknown 139.1
2750 Male, age 76, both hemispheres 116.9
Inferior colliculus
nTPM: 166.3
2849 Male, age 72, unknown 184.8
1848 Female, age 42, unknown 183.5
1890 Male, age 53, unknown 175.2
2097 Female, age 72, unknown 121.7
Median raphe nucleus
nTPM: 131.0
2220 Male, age 76, midline 131.0
Periaquaductal grey, anterior
nTPM: 180.8
1795 Male, age 51, unknown 191.0
1947 Male, age 18, unknown 183.1
2502 Female, age 75, unknown 168.2
Periaquaductal grey, dorsal
nTPM: 195.0
2850 Male, age 76, both hemispheres 228.4
1840 Male, age 53, unknown 214.1
1831 Male, age 72, unknown 176.0
2464 Female, age 72, unknown 161.7
Periaquaductal grey, lateral
nTPM: 155.0
2053 Male, age 18, unknown 200.7
2140 Male, age 76, both hemispheres 172.6
2272 Male, age 74, both hemispheres 91.9
Pretectal area
nTPM: 164.3
1817 Female, age 42, unknown 204.2
2825 Male, age 18, unknown 193.3
2667 Female, age 75, unknown 183.2
1815 Male, age 53, unknown 182.1
1816 Male, age 51, unknown 180.2
1944 Female, age 72, unknown 176.5
2407 Male, age 75, both hemispheres 171.6
2316 Male, age 76, right hemisphere 154.4
2224 Female, age 72, unknown 140.5
2007 Male, age 72, unknown 126.4
2273 Male, age 74, both hemispheres 94.8
Red nucleus
nTPM: 169.0
2584 Male, age 75, left hemisphere 199.2
2588 Male, age 74, left hemisphere 194.6
2725 Female, age 75, unknown 193.9
2503 Female, age 72, unknown 185.9
1954 Female, age 42, unknown 185.3
2227 Male, age 72, unknown 175.8
2769 Male, age 72, unknown 167.4
1904 Male, age 53, unknown 163.6
1821 Female, age 72, unknown 159.6
1865 Male, age 51, unknown 152.4
2823 Male, age 76, right hemisphere 138.3
2785 Male, age 18, unknown 112.4
Substantia nigra
nTPM: 183.7
2699 Male, age 18, unknown 319.2
2665 Male, age 74, both hemispheres 205.7
1916 Female, age 42, unknown 200.4
2583 Male, age 75, right hemisphere 197.3
1851 Male, age 51, unknown 192.5
1889 Female, age 72, unknown 169.8
1941 Male, age 53, unknown 148.9
2241 Male, age 72, unknown 146.3
2590 Female, age 75, unknown 140.8
2409 Female, age 72, unknown 116.4
Superior colliculus
nTPM: 180.3
2664 Male, age 75, both hemispheres 283.7
1995 Male, age 72, unknown 219.4
2087 Female, age 72, unknown 180.8
1913 Female, age 42, unknown 180.6
2668 Female, age 75, unknown 179.1
1796 Male, age 53, unknown 177.4
2261 Male, age 18, unknown 166.7
1839 Male, age 51, unknown 163.7
2587 Male, age 74, left hemisphere 141.4
1895 Male, age 76, right hemisphere 110.1
Ventral tegmental area
nTPM: 154.8
1942 Male, age 51, unknown 184.5
1915 Female, age 42, unknown 167.6
2021 Male, age 53, unknown 160.7
2223 Female, age 72, unknown 146.0
2410 Female, age 72, unknown 144.5
2218 Male, age 76, both hemispheres 125.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 231.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 231.9
Samples: 139

Max nTPM: 599.4
Min nTPM: 64.7
Std nTPM: 91.8
Median nTPM: 222.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 599.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 593.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 439.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 431.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 421.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 407.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 400.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 381.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 378.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 367.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 365.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 179.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 179.2
FF:10158-103A5 76 years, female 179.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.0
Samples: 4

Max nTPM: 34.6
Min nTPM: 29.8
Sample A Male 34.6
Sample B Male 30.7
Sample C Female 29.8
Sample D Female 32.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
771 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 12.9
770 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 4.1
70784952 Antisense, RP_050706_01_E08, Mouse strain C57BL/6J (56 days, male) 2.0

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