MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:317.9 nTPM
HPA Brain:402.7 nTPM
GTEx:317.9 nTPM
FANTOM5:459.3 Scaled Tags Per Million
Pig:579.9 nTPM
Mouse:203.2 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 402.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 226.4
2019 Male, age 18, unknown 260.7
2411 Female, age 72, unknown 259.2
2828 Female, age 72, unknown 257.6
1870 Female, age 42, unknown 251.6
1827 Male, age 72, unknown 230.2
2219 Male, age 76, both hemispheres 226.5
1830 Male, age 51, unknown 208.3
1833 Male, age 53, unknown 207.6
2586 Male, age 75, left hemisphere 198.7
2666 Male, age 74, left hemisphere 163.9
Dorsal raphe nucleus
nTPM: 292.4
2298 Female, age 72, unknown 413.0
2750 Male, age 76, both hemispheres 313.5
2047 Male, age 72, unknown 299.2
1828 Male, age 53, unknown 240.1
2016 Female, age 72, unknown 196.2
Inferior colliculus
nTPM: 260.0
2097 Female, age 72, unknown 344.8
1890 Male, age 53, unknown 261.8
1848 Female, age 42, unknown 229.7
2849 Male, age 72, unknown 203.8
Median raphe nucleus
nTPM: 402.7
2220 Male, age 76, midline 402.7
Periaquaductal grey, anterior
nTPM: 357.6
1795 Male, age 51, unknown 394.6
1947 Male, age 18, unknown 351.1
2502 Female, age 75, unknown 327.1
Periaquaductal grey, dorsal
nTPM: 225.2
2850 Male, age 76, both hemispheres 254.3
1840 Male, age 53, unknown 239.5
1831 Male, age 72, unknown 206.9
2464 Female, age 72, unknown 200.1
Periaquaductal grey, lateral
nTPM: 288.7
2272 Male, age 74, both hemispheres 377.2
2140 Male, age 76, both hemispheres 262.0
2053 Male, age 18, unknown 226.9
Pretectal area
nTPM: 297.3
2007 Male, age 72, unknown 361.5
1817 Female, age 42, unknown 351.0
2224 Female, age 72, unknown 349.6
2273 Male, age 74, both hemispheres 343.9
1816 Male, age 51, unknown 342.7
1944 Female, age 72, unknown 308.9
2667 Female, age 75, unknown 269.2
1815 Male, age 53, unknown 269.0
2825 Male, age 18, unknown 235.1
2316 Male, age 76, right hemisphere 225.5
2407 Male, age 75, both hemispheres 213.6
Red nucleus
nTPM: 260.8
2785 Male, age 18, unknown 325.8
2769 Male, age 72, unknown 302.7
2227 Male, age 72, unknown 301.6
2725 Female, age 75, unknown 297.1
2584 Male, age 75, left hemisphere 280.5
2503 Female, age 72, unknown 276.5
1821 Female, age 72, unknown 262.2
1865 Male, age 51, unknown 244.0
1904 Male, age 53, unknown 230.1
1954 Female, age 42, unknown 227.8
2823 Male, age 76, right hemisphere 225.1
2588 Male, age 74, left hemisphere 156.1
Substantia nigra
nTPM: 249.8
1916 Female, age 42, unknown 350.7
1889 Female, age 72, unknown 297.6
1941 Male, age 53, unknown 279.0
1851 Male, age 51, unknown 275.9
2583 Male, age 75, right hemisphere 247.0
2590 Female, age 75, unknown 243.5
2665 Male, age 74, both hemispheres 205.9
2241 Male, age 72, unknown 204.3
2409 Female, age 72, unknown 201.5
2699 Male, age 18, unknown 192.9
Superior colliculus
nTPM: 248.9
1796 Male, age 53, unknown 347.3
2261 Male, age 18, unknown 327.2
2087 Female, age 72, unknown 298.2
2587 Male, age 74, left hemisphere 251.9
1913 Female, age 42, unknown 251.6
2668 Female, age 75, unknown 249.2
1995 Male, age 72, unknown 211.5
1839 Male, age 51, unknown 205.5
1895 Male, age 76, right hemisphere 186.7
2664 Male, age 75, both hemispheres 159.9
Ventral tegmental area
nTPM: 323.3
2223 Female, age 72, unknown 449.5
2218 Male, age 76, both hemispheres 357.8
1942 Male, age 51, unknown 290.6
1915 Female, age 42, unknown 286.0
2410 Female, age 72, unknown 281.9
2021 Male, age 53, unknown 274.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 317.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 317.9
Samples: 139

Max nTPM: 706.1
Min nTPM: 112.0
Std nTPM: 85.0
Median nTPM: 313.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 706.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 556.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 513.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 481.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 477.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 474.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 469.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 462.1
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 448.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 442.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 441.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 459.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 459.3
FF:10158-103A5 76 years, female 459.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 579.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 477.4
Samples: 4

Max nTPM: 692.4
Min nTPM: 262.3
Sample A Female 692.4
Sample B Female 401.0
Sample C Male 553.8
Sample D Male 262.3
Midbrain
nTPM: 522.2
Samples: 4

Max nTPM: 673.9
Min nTPM: 424.8
Sample A Female 484.7
Sample B Female 424.8
Sample C Male 673.9
Sample D Male 505.5
Periaqueductal gray
nTPM: 396.1
Samples: 3

Max nTPM: 494.4
Min nTPM: 345.7
Sample B Female 345.7
Sample C Male 494.4
Sample D Male 348.2
Superior colliculi
nTPM: 580.0
Samples: 4

Max nTPM: 713.6
Min nTPM: 461.5
Sample A Female 713.6
Sample B Female 480.9
Sample C Male 663.8
Sample D Male 461.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 203.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 203.2
Samples: 4

Max nTPM: 272.4
Min nTPM: 158.2
Sample A Male 272.4
Sample B Male 177.0
Sample C Female 158.2
Sample D Female 205.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
2407 Antisense, RP_Baylor_102906, Mouse strain C57BL/6J (56 days, male) 1.6
2408 Antisense, RP_Baylor_102906, Mouse strain C57BL/6J (56 days, male) 0.7

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