HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.1 nTPM
HPA Brain:3.0 nTPM
GTEx:42.1 nTPM
FANTOM5:24.1 Scaled Tags Per Million
Pig:30.9 nTPM
Mouse:21.8 nTPM
Allen mouse:0.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 3.0
Sample id Sample description nTPM
Hippocampus
nTPM: 2.0
2148 Female, age 91, left hemisphere 3.4
2529 Female, age 94, left hemisphere 3.3
2621 Female, age 67, right hemisphere 3.0
1898 Male, age 80, left hemisphere 1.8
1911 Female, age 85, right hemisphere 0.7
1855 Male, age 76, left hemisphere 0.0
Dentate gyrus
nTPM: 1.5
2246 Female, age 85, both hemispheres 3.5
1927 Female, age 91, both hemispheres 2.8
2530 Female, age 94, left hemisphere 2.4
2010 Male, age 76, both hemispheres 0.4
2528 Male, age 74, both hemispheres 0.0
2531 Female, age 67, both hemispheres 0.0
Entorhinal gyrus
nTPM: 2.2
2117 Female, age 91, right hemisphere 5.0
2613 Female, age 94, left hemisphere 2.8
1938 Female, age 85, left hemisphere 2.5
2764 Male, age 80, right hemisphere 1.6
1787 Male, age 76, left hemisphere 1.1
2686 Male, age 75, right hemisphere 0.0
Hippocampus, CA1
nTPM: 1.8
2082 Female, age 91, right hemisphere 4.7
2749 Male, age 80, left hemisphere 1.6
2045 Male, age 76, both hemispheres 1.5
2527 Male, age 74, both hemispheres 1.0
1873 Female, age 85, both hemispheres 0.4
Hippocampus, CA2
nTPM: 2.6
2113 Female, age 91, right hemisphere 4.8
2249 Male, age 74, both hemispheres 2.9
1892 Male, age 76, both hemispheres 2.8
1963 Male, age 80, left hemisphere 2.7
1940 Female, age 85, left hemisphere 1.2
2437 Female, age 94, left hemisphere 1.2
Hippocampus, CA3
nTPM: 1.9
2436 Male, age 74, both hemispheres 3.9
1867 Male, age 76, both hemispheres 2.3
2620 Female, age 94, left hemisphere 2.1
1891 Female, age 85, both hemispheres 1.6
2137 Male, age 80, left hemisphere 1.6
2861 Female, age 67, both hemispheres 0.0
Parahippocampal cortex
nTPM: 3.0
2018 Male, age 76, both hemispheres 6.3
2245 Female, age 91, both hemispheres 5.2
1933 Female, age 85, both hemispheres 4.0
2250 Female, age 67, right hemisphere 3.9
1990 Female, age 91, right hemisphere 3.7
2692 Male, age 74, both hemispheres 2.7
2622 Female, age 67, right hemisphere 1.9
1850 Male, age 80, both hemispheres 1.6
2532 Female, age 72, left hemisphere 0.5
2693 Female, age 94, both hemispheres 0.0
Perirhinal gyrus
nTPM: 1.2
1841 Female, age 85, right hemisphere 1.9
1794 Male, age 80, right hemisphere 1.6
2521 Female, age 94, right hemisphere 1.6
2848 Male, age 76, right hemisphere 1.1
1847 Female, age 91, left hemisphere 0.0
Subiculum
nTPM: 1.1
1901 Male, age 80, both hemispheres 4.0
1977 Female, age 85, both hemispheres 1.1
2729 Female, age 91, right hemisphere 1.1
2042 Male, age 76, both hemispheres 0.3
2619 Male, age 74, both hemispheres 0.1
2438 Female, age 94, left hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 42.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 42.1
Samples: 197

Max nTPM: 83.7
Min nTPM: 18.7
Std nTPM: 10.7
Median nTPM: 41.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 83.7
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 82.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 75.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 74.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 74.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 63.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 63.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 63.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 61.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 60.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 59.0
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 24.1
FF:10153-102I9 76 years, female 25.4
FF:10169-103B7 60 years, female 22.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 30.9
Pig sample Sample description nTPM
Subiculum
nTPM: 21.5
Samples: 4

Max nTPM: 26.3
Min nTPM: 19.4
Sample A Female 26.3
Sample B Female 20.4
Sample C Male 19.4
Sample D Male 20.0
Dorsal hippocampus
nTPM: 30.9
Samples: 4

Max nTPM: 40.6
Min nTPM: 24.2
Sample A Female 40.6
Sample B Female 28.7
Sample C Male 30.1
Sample D Male 24.2
Entorhinal cortex
nTPM: 22.9
Samples: 4

Max nTPM: 26.6
Min nTPM: 21.5
Sample A Female 26.6
Sample B Female 21.8
Sample C Male 21.5
Sample D Male 21.6
Ventral hippocampus
nTPM: 24.9
Samples: 4

Max nTPM: 30.5
Min nTPM: 18.0
Sample A Female 21.3
Sample B Female 18.0
Sample C Male 29.7
Sample D Male 30.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 21.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 20.8
Samples: 4

Max nTPM: 22.8
Min nTPM: 18.1
Sample A Male 20.4
Sample B Male 21.8
Sample C Female 22.8
Sample D Female 18.1
Hippocampal formation
nTPM: 21.8
Samples: 4

Max nTPM: 24.8
Min nTPM: 17.8
Sample A Male 24.8
Sample B Male 21.3
Sample C Female 17.8
Sample D Female 23.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
68744928 Antisense, RP_050208_01_H08, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org