MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.8 nTPM
HPA Brain:2.0 nTPM
GTEx:41.8 nTPM
FANTOM5:38.5 Scaled Tags Per Million
Pig:25.9 nTPM
Mouse:18.6 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 2.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1.7
1870 Female, age 42, unknown 5.5
2411 Female, age 72, unknown 3.9
2586 Male, age 75, left hemisphere 1.8
2828 Female, age 72, unknown 1.8
2019 Male, age 18, unknown 0.9
1827 Male, age 72, unknown 0.8
2666 Male, age 74, left hemisphere 0.8
1833 Male, age 53, unknown 0.7
1830 Male, age 51, unknown 0.5
2219 Male, age 76, both hemispheres 0.0
Dorsal raphe nucleus
nTPM: 1.9
2750 Male, age 76, both hemispheres 5.9
2047 Male, age 72, unknown 2.2
2016 Female, age 72, unknown 0.8
1828 Male, age 53, unknown 0.7
2298 Female, age 72, unknown 0.1
Inferior colliculus
nTPM: 0.5
1890 Male, age 53, unknown 1.0
1848 Female, age 42, unknown 0.3
2097 Female, age 72, unknown 0.3
2849 Male, age 72, unknown 0.3
Median raphe nucleus
nTPM: 1.2
2220 Male, age 76, midline 1.2
Periaquaductal grey, anterior
nTPM: 1.5
2502 Female, age 75, unknown 1.9
1795 Male, age 51, unknown 1.6
1947 Male, age 18, unknown 0.9
Periaquaductal grey, dorsal
nTPM: 1.1
2464 Female, age 72, unknown 2.2
1831 Male, age 72, unknown 1.4
1840 Male, age 53, unknown 0.7
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 1.0
2140 Male, age 76, both hemispheres 1.7
2053 Male, age 18, unknown 0.9
2272 Male, age 74, both hemispheres 0.4
Pretectal area
nTPM: 2.0
1817 Female, age 42, unknown 8.0
2224 Female, age 72, unknown 2.9
2407 Male, age 75, both hemispheres 1.9
2316 Male, age 76, right hemisphere 1.8
1944 Female, age 72, unknown 1.5
2825 Male, age 18, unknown 1.5
2667 Female, age 75, unknown 1.4
1815 Male, age 53, unknown 1.2
2273 Male, age 74, both hemispheres 0.9
2007 Male, age 72, unknown 0.6
1816 Male, age 51, unknown 0.5
Red nucleus
nTPM: 1.6
2227 Male, age 72, unknown 3.9
2503 Female, age 72, unknown 3.1
1821 Female, age 72, unknown 2.9
2769 Male, age 72, unknown 2.5
1865 Male, age 51, unknown 2.1
2785 Male, age 18, unknown 1.6
2725 Female, age 75, unknown 1.2
1904 Male, age 53, unknown 0.7
2823 Male, age 76, right hemisphere 0.6
2588 Male, age 74, left hemisphere 0.4
2584 Male, age 75, left hemisphere 0.3
1954 Female, age 42, unknown 0.2
Substantia nigra
nTPM: 0.8
1889 Female, age 72, unknown 2.5
1851 Male, age 51, unknown 1.5
2583 Male, age 75, right hemisphere 1.2
2699 Male, age 18, unknown 0.9
1941 Male, age 53, unknown 0.7
2590 Female, age 75, unknown 0.7
2409 Female, age 72, unknown 0.3
2665 Male, age 74, both hemispheres 0.1
1916 Female, age 42, unknown 0.0
2241 Male, age 72, unknown 0.0
Superior colliculus
nTPM: 2.0
2587 Male, age 74, left hemisphere 4.1
1913 Female, age 42, unknown 3.2
1895 Male, age 76, right hemisphere 2.6
2261 Male, age 18, unknown 2.6
1796 Male, age 53, unknown 1.6
1839 Male, age 51, unknown 1.6
2668 Female, age 75, unknown 1.5
1995 Male, age 72, unknown 1.4
2087 Female, age 72, unknown 1.3
2664 Male, age 75, both hemispheres 0.0
Ventral tegmental area
nTPM: 2.0
2021 Male, age 53, unknown 5.2
1942 Male, age 51, unknown 2.2
2218 Male, age 76, both hemispheres 1.8
1915 Female, age 42, unknown 1.5
2223 Female, age 72, unknown 1.5
2410 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.8
Samples: 139

Max nTPM: 87.4
Min nTPM: 18.1
Std nTPM: 10.4
Median nTPM: 39.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 87.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 73.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 70.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 68.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 68.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 62.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 60.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 58.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 58.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 57.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 57.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.5
FF:10158-103A5 76 years, female 38.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.5
Samples: 4

Max nTPM: 26.3
Min nTPM: 18.5
Sample A Female 26.3
Sample B Female 18.5
Sample C Male 23.1
Sample D Male 26.2
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 36.4
Min nTPM: 18.2
Sample A Female 36.4
Sample B Female 26.3
Sample C Male 18.2
Sample D Male 22.7
Periaqueductal gray
nTPM: 25.2
Samples: 3

Max nTPM: 27.9
Min nTPM: 23.5
Sample B Female 23.5
Sample C Male 27.9
Sample D Male 24.2
Superior colliculi
nTPM: 23.0
Samples: 4

Max nTPM: 29.0
Min nTPM: 17.9
Sample A Female 29.0
Sample B Female 17.9
Sample C Male 19.4
Sample D Male 25.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.6
Samples: 4

Max nTPM: 21.2
Min nTPM: 16.5
Sample A Male 21.2
Sample B Male 18.3
Sample C Female 16.5
Sample D Female 18.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68744928 Antisense, RP_050208_01_H08, Mouse strain C57BL/6J (56 days, male) 0.3

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