MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.4 nTPM
HPA Brain:31.8 nTPM
GTEx:18.4 nTPM
FANTOM5:38.1 Scaled Tags Per Million
Pig:20.9 nTPM
Mouse:14.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.2
2586 Male, age 75, left hemisphere 44.5
2828 Female, age 72, unknown 33.1
1870 Female, age 42, unknown 29.7
1827 Male, age 72, unknown 27.6
2666 Male, age 74, left hemisphere 27.6
1833 Male, age 53, unknown 26.4
2411 Female, age 72, unknown 23.7
1830 Male, age 51, unknown 22.8
2019 Male, age 18, unknown 21.0
2219 Male, age 76, both hemispheres 15.5
Dorsal raphe nucleus
nTPM: 29.4
1828 Male, age 53, unknown 34.0
2016 Female, age 72, unknown 32.0
2047 Male, age 72, unknown 30.2
2750 Male, age 76, both hemispheres 27.7
2298 Female, age 72, unknown 23.0
Inferior colliculus
nTPM: 29.6
1848 Female, age 42, unknown 32.5
2849 Male, age 72, unknown 31.8
1890 Male, age 53, unknown 27.9
2097 Female, age 72, unknown 26.2
Median raphe nucleus
nTPM: 21.5
2220 Male, age 76, midline 21.5
Periaquaductal grey, anterior
nTPM: 27.7
2502 Female, age 75, unknown 31.1
1795 Male, age 51, unknown 29.2
1947 Male, age 18, unknown 22.7
Periaquaductal grey, dorsal
nTPM: 27.5
1840 Male, age 53, unknown 32.0
2464 Female, age 72, unknown 27.6
1831 Male, age 72, unknown 27.2
2850 Male, age 76, both hemispheres 23.1
Periaquaductal grey, lateral
nTPM: 26.7
2053 Male, age 18, unknown 32.6
2140 Male, age 76, both hemispheres 27.2
2272 Male, age 74, both hemispheres 20.2
Pretectal area
nTPM: 26.9
2667 Female, age 75, unknown 34.3
1816 Male, age 51, unknown 32.8
2825 Male, age 18, unknown 29.7
1944 Female, age 72, unknown 29.3
2316 Male, age 76, right hemisphere 26.9
1817 Female, age 42, unknown 26.3
2407 Male, age 75, both hemispheres 25.2
2224 Female, age 72, unknown 23.8
1815 Male, age 53, unknown 23.6
2007 Male, age 72, unknown 22.7
2273 Male, age 74, both hemispheres 21.5
Red nucleus
nTPM: 27.7
2769 Male, age 72, unknown 31.6
2823 Male, age 76, right hemisphere 31.5
1954 Female, age 42, unknown 31.3
2227 Male, age 72, unknown 30.8
2584 Male, age 75, left hemisphere 29.9
2503 Female, age 72, unknown 28.3
1821 Female, age 72, unknown 27.3
1904 Male, age 53, unknown 27.3
2588 Male, age 74, left hemisphere 26.7
1865 Male, age 51, unknown 25.3
2725 Female, age 75, unknown 23.5
2785 Male, age 18, unknown 19.2
Substantia nigra
nTPM: 31.8
2699 Male, age 18, unknown 43.4
1916 Female, age 42, unknown 38.2
2665 Male, age 74, both hemispheres 35.1
2583 Male, age 75, right hemisphere 34.7
1851 Male, age 51, unknown 31.3
2409 Female, age 72, unknown 30.4
2590 Female, age 75, unknown 29.3
2241 Male, age 72, unknown 27.0
1889 Female, age 72, unknown 25.7
1941 Male, age 53, unknown 23.0
Superior colliculus
nTPM: 27.2
2664 Male, age 75, both hemispheres 32.3
1796 Male, age 53, unknown 30.2
2261 Male, age 18, unknown 30.1
2087 Female, age 72, unknown 29.2
1839 Male, age 51, unknown 28.4
2587 Male, age 74, left hemisphere 25.6
1913 Female, age 42, unknown 25.5
1995 Male, age 72, unknown 24.3
1895 Male, age 76, right hemisphere 23.6
2668 Female, age 75, unknown 23.1
Ventral tegmental area
nTPM: 27.9
1915 Female, age 42, unknown 32.7
2021 Male, age 53, unknown 29.5
2410 Female, age 72, unknown 28.9
2218 Male, age 76, both hemispheres 28.0
1942 Male, age 51, unknown 25.3
2223 Female, age 72, unknown 22.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.4
Samples: 139

Max nTPM: 40.6
Min nTPM: 2.6
Std nTPM: 7.1
Median nTPM: 17.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 40.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 39.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 37.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 37.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 37.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 36.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 32.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 32.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 31.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 30.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 29.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.1
FF:10158-103A5 76 years, female 38.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.0
Samples: 4

Max nTPM: 18.2
Min nTPM: 13.4
Sample A Female 13.4
Sample B Female 18.2
Sample C Male 14.7
Sample D Male 17.8
Midbrain
nTPM: 13.3
Samples: 4

Max nTPM: 16.5
Min nTPM: 11.2
Sample A Female 16.5
Sample B Female 11.2
Sample C Male 13.2
Sample D Male 12.3
Periaqueductal gray
nTPM: 12.1
Samples: 3

Max nTPM: 13.1
Min nTPM: 11.0
Sample B Female 11.0
Sample C Male 12.3
Sample D Male 13.1
Superior colliculi
nTPM: 20.9
Samples: 4

Max nTPM: 31.7
Min nTPM: 13.9
Sample A Female 20.4
Sample B Female 31.7
Sample C Male 13.9
Sample D Male 17.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.6
Samples: 4

Max nTPM: 16.7
Min nTPM: 12.2
Sample A Male 16.7
Sample B Male 14.2
Sample C Female 12.2
Sample D Female 15.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68498220 Antisense, RP_050113_01_E09, Mouse strain C57BL/6J (56 days, male) 0.1

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