MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.1 nTPM
HPA Brain:35.9 nTPM
GTEx:49.1 nTPM
FANTOM5:22.8 Scaled Tags Per Million
Pig:46.2 nTPM
Mouse:32.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.8
1870 Female, age 42, unknown 30.6
1833 Male, age 53, unknown 27.5
2411 Female, age 72, unknown 27.4
2219 Male, age 76, both hemispheres 26.5
1830 Male, age 51, unknown 25.8
2586 Male, age 75, left hemisphere 25.8
1827 Male, age 72, unknown 23.2
2666 Male, age 74, left hemisphere 21.6
2828 Female, age 72, unknown 19.7
2019 Male, age 18, unknown 19.5
Dorsal raphe nucleus
nTPM: 28.8
2047 Male, age 72, unknown 31.8
2298 Female, age 72, unknown 30.7
2750 Male, age 76, both hemispheres 29.4
2016 Female, age 72, unknown 28.5
1828 Male, age 53, unknown 23.8
Inferior colliculus
nTPM: 23.1
2097 Female, age 72, unknown 26.9
1890 Male, age 53, unknown 25.2
2849 Male, age 72, unknown 20.5
1848 Female, age 42, unknown 20.0
Median raphe nucleus
nTPM: 30.2
2220 Male, age 76, midline 30.2
Periaquaductal grey, anterior
nTPM: 29.9
1947 Male, age 18, unknown 34.7
2502 Female, age 75, unknown 28.6
1795 Male, age 51, unknown 26.2
Periaquaductal grey, dorsal
nTPM: 27.2
1840 Male, age 53, unknown 30.4
2850 Male, age 76, both hemispheres 28.5
1831 Male, age 72, unknown 25.6
2464 Female, age 72, unknown 24.3
Periaquaductal grey, lateral
nTPM: 22.2
2053 Male, age 18, unknown 27.0
2140 Male, age 76, both hemispheres 21.0
2272 Male, age 74, both hemispheres 18.7
Pretectal area
nTPM: 25.3
2224 Female, age 72, unknown 29.9
2825 Male, age 18, unknown 28.2
1815 Male, age 53, unknown 26.4
1944 Female, age 72, unknown 26.1
2407 Male, age 75, both hemispheres 25.9
2667 Female, age 75, unknown 25.8
2316 Male, age 76, right hemisphere 24.9
2273 Male, age 74, both hemispheres 24.1
1817 Female, age 42, unknown 22.8
1816 Male, age 51, unknown 22.4
2007 Male, age 72, unknown 22.1
Red nucleus
nTPM: 24.5
1904 Male, age 53, unknown 30.5
1821 Female, age 72, unknown 28.7
2584 Male, age 75, left hemisphere 27.2
1865 Male, age 51, unknown 27.0
1954 Female, age 42, unknown 26.9
2823 Male, age 76, right hemisphere 24.2
2503 Female, age 72, unknown 23.8
2769 Male, age 72, unknown 22.8
2588 Male, age 74, left hemisphere 22.7
2227 Male, age 72, unknown 21.2
2725 Female, age 75, unknown 20.8
2785 Male, age 18, unknown 17.9
Substantia nigra
nTPM: 35.9
2241 Male, age 72, unknown 59.7
2409 Female, age 72, unknown 45.9
2699 Male, age 18, unknown 39.1
1851 Male, age 51, unknown 38.6
1916 Female, age 42, unknown 34.3
2665 Male, age 74, both hemispheres 31.8
2590 Female, age 75, unknown 30.2
2583 Male, age 75, right hemisphere 28.6
1889 Female, age 72, unknown 26.2
1941 Male, age 53, unknown 25.0
Superior colliculus
nTPM: 24.5
2668 Female, age 75, unknown 33.1
1913 Female, age 42, unknown 25.7
2587 Male, age 74, left hemisphere 25.1
2664 Male, age 75, both hemispheres 24.6
1796 Male, age 53, unknown 23.3
1839 Male, age 51, unknown 23.0
2261 Male, age 18, unknown 22.9
1895 Male, age 76, right hemisphere 22.8
2087 Female, age 72, unknown 22.8
1995 Male, age 72, unknown 21.9
Ventral tegmental area
nTPM: 30.4
1915 Female, age 42, unknown 36.3
2223 Female, age 72, unknown 32.3
1942 Male, age 51, unknown 31.0
2021 Male, age 53, unknown 29.2
2218 Male, age 76, both hemispheres 27.0
2410 Female, age 72, unknown 26.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.1
Samples: 139

Max nTPM: 200.0
Min nTPM: 21.8
Std nTPM: 21.9
Median nTPM: 44.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 200.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 134.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 130.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 120.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 100.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 77.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 76.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 76.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 75.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 73.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 70.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.8
FF:10158-103A5 76 years, female 22.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.2
Samples: 4

Max nTPM: 52.4
Min nTPM: 40.8
Sample A Female 52.4
Sample B Female 48.6
Sample C Male 43.0
Sample D Male 40.8
Midbrain
nTPM: 39.2
Samples: 4

Max nTPM: 58.8
Min nTPM: 27.2
Sample A Female 58.8
Sample B Female 42.6
Sample C Male 27.2
Sample D Male 28.2
Periaqueductal gray
nTPM: 43.9
Samples: 3

Max nTPM: 59.5
Min nTPM: 31.8
Sample B Female 31.8
Sample C Male 59.5
Sample D Male 40.3
Superior colliculi
nTPM: 39.3
Samples: 4

Max nTPM: 52.7
Min nTPM: 30.3
Sample A Female 40.6
Sample B Female 52.7
Sample C Male 33.4
Sample D Male 30.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.2
Samples: 4

Max nTPM: 41.9
Min nTPM: 27.0
Sample A Male 41.9
Sample B Male 27.0
Sample C Female 28.4
Sample D Female 31.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71280814 Antisense, RP_050818_01_F07, Mouse strain C57BL/6J (56 days, male) 0.1

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