MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:889.1 nTPM
HPA Brain:860.3 nTPM
GTEx:889.1 nTPM
FANTOM5:903.2 Scaled Tags Per Million
Pig:115.6 nTPM
Mouse:196.2 nTPM
Allen mouse:16.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 860.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 653.3
2411 Female, age 72, unknown 907.3
1830 Male, age 51, unknown 829.0
1833 Male, age 53, unknown 825.8
1870 Female, age 42, unknown 763.6
2019 Male, age 18, unknown 760.9
2828 Female, age 72, unknown 601.0
1827 Male, age 72, unknown 474.0
2666 Male, age 74, left hemisphere 466.1
2219 Male, age 76, both hemispheres 455.7
2586 Male, age 75, left hemisphere 450.0
Dorsal raphe nucleus
nTPM: 457.0
2750 Male, age 76, both hemispheres 849.9
2016 Female, age 72, unknown 463.3
1828 Male, age 53, unknown 425.3
2298 Female, age 72, unknown 276.3
2047 Male, age 72, unknown 270.0
Inferior colliculus
nTPM: 404.1
1848 Female, age 42, unknown 429.4
2849 Male, age 72, unknown 418.1
1890 Male, age 53, unknown 404.0
2097 Female, age 72, unknown 364.7
Median raphe nucleus
nTPM: 370.3
2220 Male, age 76, midline 370.3
Periaquaductal grey, anterior
nTPM: 317.8
1947 Male, age 18, unknown 368.4
2502 Female, age 75, unknown 317.5
1795 Male, age 51, unknown 267.6
Periaquaductal grey, dorsal
nTPM: 293.2
2464 Female, age 72, unknown 470.3
1831 Male, age 72, unknown 331.2
2850 Male, age 76, both hemispheres 192.4
1840 Male, age 53, unknown 178.7
Periaquaductal grey, lateral
nTPM: 313.2
2272 Male, age 74, both hemispheres 381.0
2053 Male, age 18, unknown 379.1
2140 Male, age 76, both hemispheres 179.7
Pretectal area
nTPM: 415.2
1815 Male, age 53, unknown 649.5
2316 Male, age 76, right hemisphere 540.4
1817 Female, age 42, unknown 504.4
2407 Male, age 75, both hemispheres 495.5
2007 Male, age 72, unknown 460.6
2825 Male, age 18, unknown 409.2
2273 Male, age 74, both hemispheres 370.0
2224 Female, age 72, unknown 322.1
2667 Female, age 75, unknown 283.2
1816 Male, age 51, unknown 266.6
1944 Female, age 72, unknown 265.5
Red nucleus
nTPM: 860.3
1865 Male, age 51, unknown 1116.7
1904 Male, age 53, unknown 1072.7
1821 Female, age 72, unknown 1050.0
2823 Male, age 76, right hemisphere 1007.6
2769 Male, age 72, unknown 877.3
2785 Male, age 18, unknown 842.1
2227 Male, age 72, unknown 840.4
2503 Female, age 72, unknown 839.2
1954 Female, age 42, unknown 816.0
2725 Female, age 75, unknown 685.5
2588 Male, age 74, left hemisphere 670.8
2584 Male, age 75, left hemisphere 505.7
Substantia nigra
nTPM: 484.2
2583 Male, age 75, right hemisphere 683.0
2590 Female, age 75, unknown 584.5
2409 Female, age 72, unknown 565.6
1851 Male, age 51, unknown 563.1
1889 Female, age 72, unknown 544.0
2699 Male, age 18, unknown 440.6
1941 Male, age 53, unknown 388.9
2241 Male, age 72, unknown 369.7
1916 Female, age 42, unknown 359.0
2665 Male, age 74, both hemispheres 343.8
Superior colliculus
nTPM: 568.5
1995 Male, age 72, unknown 896.2
1913 Female, age 42, unknown 879.3
2668 Female, age 75, unknown 725.1
1895 Male, age 76, right hemisphere 666.0
2587 Male, age 74, left hemisphere 624.2
1839 Male, age 51, unknown 548.3
1796 Male, age 53, unknown 419.0
2087 Female, age 72, unknown 326.4
2261 Male, age 18, unknown 302.1
2664 Male, age 75, both hemispheres 298.1
Ventral tegmental area
nTPM: 542.5
2223 Female, age 72, unknown 794.2
2410 Female, age 72, unknown 725.1
1915 Female, age 42, unknown 446.8
2218 Male, age 76, both hemispheres 437.4
2021 Male, age 53, unknown 430.2
1942 Male, age 51, unknown 421.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 889.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 889.1
Samples: 139

Max nTPM: 3393.9
Min nTPM: 253.9
Std nTPM: 519.3
Median nTPM: 754.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 3393.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2751.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2598.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2563.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2271.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 2191.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1845.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1795.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 1755.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1690.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1594.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 903.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 903.2
FF:10158-103A5 76 years, female 903.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 115.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 97.7
Samples: 4

Max nTPM: 127.9
Min nTPM: 61.6
Sample A Female 119.7
Sample B Female 61.6
Sample C Male 81.7
Sample D Male 127.9
Midbrain
nTPM: 115.6
Samples: 4

Max nTPM: 234.3
Min nTPM: 65.9
Sample A Female 234.3
Sample B Female 95.4
Sample C Male 66.9
Sample D Male 65.9
Periaqueductal gray
nTPM: 69.7
Samples: 3

Max nTPM: 79.1
Min nTPM: 62.3
Sample B Female 79.1
Sample C Male 62.3
Sample D Male 67.8
Superior colliculi
nTPM: 89.8
Samples: 4

Max nTPM: 117.2
Min nTPM: 47.8
Sample A Female 117.2
Sample B Female 47.8
Sample C Male 93.1
Sample D Male 101.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 196.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 196.2
Samples: 4

Max nTPM: 215.7
Min nTPM: 174.9
Sample A Male 197.3
Sample B Male 174.9
Sample C Female 196.9
Sample D Female 215.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.4
45668 Antisense, RP_040324_01_H05, Mouse strain C57BL/6J (56 days, male) 16.4
67936386 Antisense, RP_040324_01_H05, Mouse strain C57BL/6J (56 days, male) 7.9

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