HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		71.381
RNA expressioni
Consensus:11.9 nTPM
HPA Brain:17.1 nTPM
GTEx:11.9 nTPM
FANTOM5:16.1 Scaled Tags Per Million
Pig:18.9 nTPM
Mouse:69.0 nTPM
Allen mouse:7.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA052833
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA052833
Hippocampal formation mean intensity 71.381
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 59.566
Molecular layer of the dentate gyrus 31.335
Granular dentate gyrus 57.482
CA1 - oriens layer 46.103
CA1 - pyramidal layer 71.381
CA1 - radiatum layer 32.104
CA2 - oriens layer 44.667
CA2 - pyramidal layer 64.642
CA2 - radiatum layer 42.754
CA3 - oriens layer 35.286
CA3 - pyramidal layer 55.434
CA3 - radiatum layer 39.652
Stratum lucidum 33.259
Lacunosum moleculare 43.646
Subiculum 42.313

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 17.1
Sample id Sample description nTPM
Hippocampus
nTPM: 9.5
2529 Female, age 94, left hemisphere 12.0
1911 Female, age 85, right hemisphere 11.5
2621 Female, age 67, right hemisphere 11.2
1898 Male, age 80, left hemisphere 8.7
2148 Female, age 91, left hemisphere 7.0
1855 Male, age 76, left hemisphere 6.4
Dentate gyrus
nTPM: 8.8
1927 Female, age 91, both hemispheres 13.6
2528 Male, age 74, both hemispheres 12.5
2531 Female, age 67, both hemispheres 7.9
2246 Female, age 85, both hemispheres 6.7
2530 Female, age 94, left hemisphere 6.5
2010 Male, age 76, both hemispheres 5.9
Entorhinal gyrus
nTPM: 12.3
2686 Male, age 75, right hemisphere 17.3
2613 Female, age 94, left hemisphere 14.0
1787 Male, age 76, left hemisphere 12.7
2764 Male, age 80, right hemisphere 12.7
1938 Female, age 85, left hemisphere 10.2
2117 Female, age 91, right hemisphere 7.1
Hippocampus, CA1
nTPM: 12.3
2749 Male, age 80, left hemisphere 22.5
2527 Male, age 74, both hemispheres 15.3
2082 Female, age 91, right hemisphere 9.7
1873 Female, age 85, both hemispheres 6.9
2045 Male, age 76, both hemispheres 6.9
Hippocampus, CA2
nTPM: 10.5
2437 Female, age 94, left hemisphere 15.4
1892 Male, age 76, both hemispheres 15.0
2249 Male, age 74, both hemispheres 11.2
2113 Female, age 91, right hemisphere 8.3
1963 Male, age 80, left hemisphere 8.0
1940 Female, age 85, left hemisphere 5.2
Hippocampus, CA3
nTPM: 14.6
2137 Male, age 80, left hemisphere 28.7
1867 Male, age 76, both hemispheres 23.1
2436 Male, age 74, both hemispheres 11.2
2861 Female, age 67, both hemispheres 8.8
1891 Female, age 85, both hemispheres 8.2
2620 Female, age 94, left hemisphere 7.4
Parahippocampal cortex
nTPM: 16.2
2250 Female, age 67, right hemisphere 21.6
2622 Female, age 67, right hemisphere 19.2
2692 Male, age 74, both hemispheres 18.2
2245 Female, age 91, both hemispheres 18.0
2693 Female, age 94, both hemispheres 16.3
1990 Female, age 91, right hemisphere 15.9
2532 Female, age 72, left hemisphere 14.9
2018 Male, age 76, both hemispheres 14.4
1850 Male, age 80, both hemispheres 12.5
1933 Female, age 85, both hemispheres 10.6
Perirhinal gyrus
nTPM: 17.1
1841 Female, age 85, right hemisphere 20.1
1794 Male, age 80, right hemisphere 18.7
1847 Female, age 91, left hemisphere 16.8
2848 Male, age 76, right hemisphere 15.6
2521 Female, age 94, right hemisphere 14.2
Subiculum
nTPM: 13.8
2619 Male, age 74, both hemispheres 23.7
1901 Male, age 80, both hemispheres 15.0
2438 Female, age 94, left hemisphere 14.9
2042 Male, age 76, both hemispheres 13.5
1977 Female, age 85, both hemispheres 9.2
2729 Female, age 91, right hemisphere 6.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.9
Samples: 197

Max nTPM: 93.7
Min nTPM: 0.3
Std nTPM: 12.8
Median nTPM: 7.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 93.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 72.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 56.1
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 49.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 43.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 39.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 39.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 38.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 37.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 35.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 35.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.1
FF:10169-103B7 60 years, female 24.9
FF:10153-102I9 76 years, female 7.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 18.9
Pig sample Sample description nTPM
Subiculum
nTPM: 8.6
Samples: 4

Max nTPM: 14.2
Min nTPM: 6.2
Sample A Female 14.2
Sample B Female 6.2
Sample C Male 7.5
Sample D Male 6.3
Dorsal hippocampus
nTPM: 11.6
Samples: 4

Max nTPM: 16.0
Min nTPM: 7.5
Sample A Female 14.2
Sample B Female 8.7
Sample C Male 16.0
Sample D Male 7.5
Entorhinal cortex
nTPM: 18.9
Samples: 4

Max nTPM: 23.6
Min nTPM: 12.0
Sample A Female 20.3
Sample B Female 23.6
Sample C Male 19.6
Sample D Male 12.0
Ventral hippocampus
nTPM: 9.5
Samples: 4

Max nTPM: 12.7
Min nTPM: 7.2
Sample A Female 9.0
Sample B Female 7.2
Sample C Male 12.7
Sample D Male 9.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 69.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 56.2
Samples: 4

Max nTPM: 64.2
Min nTPM: 47.3
Sample A Male 62.7
Sample B Male 64.2
Sample C Female 50.4
Sample D Female 47.3
Hippocampal formation
nTPM: 69.0
Samples: 4

Max nTPM: 82.0
Min nTPM: 60.1
Sample A Male 60.1
Sample B Male 63.3
Sample C Female 70.7
Sample D Female 82.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.7
75084520 Antisense, RP_060412_04_C10, Mouse strain C57BL/6J (56 days, male) 11.0
69782873 Antisense, RP_050505_03_H09, Mouse strain C57BL/6J (56 days, male) 4.3

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