MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:296.3 nTPM
HPA Brain:498.8 nTPM
GTEx:296.3 nTPM
FANTOM5:2495.1 Scaled Tags Per Million
Mouse:603.8 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 498.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 320.4
2019 Male, age 18, unknown 486.6
1870 Female, age 42, unknown 455.5
2411 Female, age 72, unknown 440.4
1830 Male, age 51, unknown 394.7
1833 Male, age 53, unknown 363.3
2828 Female, age 72, unknown 329.9
2219 Male, age 76, both hemispheres 238.0
1827 Male, age 72, unknown 185.0
2666 Male, age 74, left hemisphere 161.9
2586 Male, age 75, left hemisphere 149.2
Dorsal raphe nucleus
nTPM: 299.1
2750 Male, age 76, both hemispheres 610.3
1828 Male, age 53, unknown 259.1
2016 Female, age 72, unknown 243.3
2298 Female, age 72, unknown 205.4
2047 Male, age 72, unknown 177.4
Inferior colliculus
nTPM: 223.7
1848 Female, age 42, unknown 246.6
1890 Male, age 53, unknown 240.0
2097 Female, age 72, unknown 230.0
2849 Male, age 72, unknown 178.1
Median raphe nucleus
nTPM: 377.4
2220 Male, age 76, midline 377.4
Periaquaductal grey, anterior
nTPM: 200.3
2502 Female, age 75, unknown 256.5
1947 Male, age 18, unknown 184.9
1795 Male, age 51, unknown 159.4
Periaquaductal grey, dorsal
nTPM: 155.3
2464 Female, age 72, unknown 226.7
1831 Male, age 72, unknown 154.6
2850 Male, age 76, both hemispheres 120.4
1840 Male, age 53, unknown 119.3
Periaquaductal grey, lateral
nTPM: 196.1
2272 Male, age 74, both hemispheres 233.9
2053 Male, age 18, unknown 194.3
2140 Male, age 76, both hemispheres 160.1
Pretectal area
nTPM: 211.6
2273 Male, age 74, both hemispheres 283.2
2316 Male, age 76, right hemisphere 274.9
1815 Male, age 53, unknown 264.8
2667 Female, age 75, unknown 248.2
1817 Female, age 42, unknown 239.6
2007 Male, age 72, unknown 212.5
2224 Female, age 72, unknown 194.1
2825 Male, age 18, unknown 192.5
2407 Male, age 75, both hemispheres 160.8
1944 Female, age 72, unknown 132.0
1816 Male, age 51, unknown 124.6
Red nucleus
nTPM: 498.8
1821 Female, age 72, unknown 659.8
1865 Male, age 51, unknown 641.3
1904 Male, age 53, unknown 602.8
2227 Male, age 72, unknown 592.1
2769 Male, age 72, unknown 583.4
2823 Male, age 76, right hemisphere 583.1
1954 Female, age 42, unknown 548.4
2785 Male, age 18, unknown 500.3
2503 Female, age 72, unknown 476.0
2588 Male, age 74, left hemisphere 299.4
2725 Female, age 75, unknown 272.6
2584 Male, age 75, left hemisphere 227.0
Substantia nigra
nTPM: 251.8
1851 Male, age 51, unknown 338.9
2409 Female, age 72, unknown 304.6
1889 Female, age 72, unknown 294.2
2241 Male, age 72, unknown 282.9
2699 Male, age 18, unknown 258.0
1916 Female, age 42, unknown 245.6
2590 Female, age 75, unknown 241.3
2583 Male, age 75, right hemisphere 218.1
1941 Male, age 53, unknown 210.7
2665 Male, age 74, both hemispheres 124.0
Superior colliculus
nTPM: 259.9
2587 Male, age 74, left hemisphere 399.0
1913 Female, age 42, unknown 394.1
1995 Male, age 72, unknown 372.3
1895 Male, age 76, right hemisphere 275.2
2668 Female, age 75, unknown 263.9
1839 Male, age 51, unknown 254.8
1796 Male, age 53, unknown 212.7
2087 Female, age 72, unknown 185.8
2261 Male, age 18, unknown 144.8
2664 Male, age 75, both hemispheres 96.0
Ventral tegmental area
nTPM: 376.6
2223 Female, age 72, unknown 663.5
2410 Female, age 72, unknown 451.2
2218 Male, age 76, both hemispheres 362.9
2021 Male, age 53, unknown 270.5
1942 Male, age 51, unknown 263.4
1915 Female, age 42, unknown 248.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 296.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 296.3
Samples: 139

Max nTPM: 1577.2
Min nTPM: 85.7
Std nTPM: 177.0
Median nTPM: 247.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1577.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 841.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 787.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 723.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 718.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 643.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 607.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 561.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 547.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 541.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 502.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2495.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2495.1
FF:10158-103A5 76 years, female 2495.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 603.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 603.9
Samples: 4

Max nTPM: 639.3
Min nTPM: 562.7
Sample A Male 586.3
Sample B Male 562.7
Sample C Female 639.3
Sample D Female 627.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
79903768 Antisense, RP_071204_02_B09, Mouse strain C57BL/6J (56 days, male) 6.5

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