HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.9 nTPM
HPA Brain:49.7 nTPM
GTEx:22.9 nTPM
FANTOM5:16.3 Scaled Tags Per Million
Pig:40.9 nTPM
Mouse:98.6 nTPM
Allen mouse:7.9 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 49.7
Sample id Sample description nTPM
Hippocampus
nTPM: 28.9
1898 Male, age 80, left hemisphere 38.0
2621 Female, age 67, right hemisphere 35.2
2529 Female, age 94, left hemisphere 28.4
1911 Female, age 85, right hemisphere 25.6
1855 Male, age 76, left hemisphere 24.0
2148 Female, age 91, left hemisphere 22.3
Dentate gyrus
nTPM: 26.6
1927 Female, age 91, both hemispheres 30.5
2531 Female, age 67, both hemispheres 28.7
2530 Female, age 94, left hemisphere 27.6
2010 Male, age 76, both hemispheres 26.9
2246 Female, age 85, both hemispheres 23.5
2528 Male, age 74, both hemispheres 22.5
Entorhinal gyrus
nTPM: 44.2
2613 Female, age 94, left hemisphere 62.3
2764 Male, age 80, right hemisphere 47.8
2686 Male, age 75, right hemisphere 42.2
1787 Male, age 76, left hemisphere 41.9
1938 Female, age 85, left hemisphere 37.5
2117 Female, age 91, right hemisphere 33.8
Hippocampus, CA1
nTPM: 32.5
2749 Male, age 80, left hemisphere 52.3
2527 Male, age 74, both hemispheres 36.8
2045 Male, age 76, both hemispheres 26.2
2082 Female, age 91, right hemisphere 24.0
1873 Female, age 85, both hemispheres 23.2
Hippocampus, CA2
nTPM: 32.2
2437 Female, age 94, left hemisphere 43.5
1892 Male, age 76, both hemispheres 38.5
2249 Male, age 74, both hemispheres 30.7
1963 Male, age 80, left hemisphere 28.4
1940 Female, age 85, left hemisphere 26.9
2113 Female, age 91, right hemisphere 25.2
Hippocampus, CA3
nTPM: 31.5
1867 Male, age 76, both hemispheres 42.5
2861 Female, age 67, both hemispheres 33.5
2137 Male, age 80, left hemisphere 31.8
2620 Female, age 94, left hemisphere 28.6
1891 Female, age 85, both hemispheres 28.5
2436 Male, age 74, both hemispheres 24.0
Parahippocampal cortex
nTPM: 42.1
1990 Female, age 91, right hemisphere 56.9
2622 Female, age 67, right hemisphere 49.4
2245 Female, age 91, both hemispheres 48.6
2250 Female, age 67, right hemisphere 48.4
1933 Female, age 85, both hemispheres 40.9
2693 Female, age 94, both hemispheres 40.6
1850 Male, age 80, both hemispheres 38.6
2018 Male, age 76, both hemispheres 34.5
2532 Female, age 72, left hemisphere 33.5
2692 Male, age 74, both hemispheres 30.1
Perirhinal gyrus
nTPM: 49.7
1847 Female, age 91, left hemisphere 71.8
2521 Female, age 94, right hemisphere 55.2
1794 Male, age 80, right hemisphere 47.9
2848 Male, age 76, right hemisphere 38.2
1841 Female, age 85, right hemisphere 35.5
Subiculum
nTPM: 37.1
2438 Female, age 94, left hemisphere 46.8
2619 Male, age 74, both hemispheres 46.7
1977 Female, age 85, both hemispheres 45.4
1901 Male, age 80, both hemispheres 36.3
2042 Male, age 76, both hemispheres 24.4
2729 Female, age 91, right hemisphere 23.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 22.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.9
Samples: 197

Max nTPM: 71.5
Min nTPM: 1.7
Std nTPM: 14.4
Median nTPM: 19.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 71.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 63.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 63.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 62.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 60.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 59.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 58.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 53.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 51.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 50.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 50.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.3
FF:10169-103B7 60 years, female 18.6
FF:10153-102I9 76 years, female 13.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 40.9
Pig sample Sample description nTPM
Subiculum
nTPM: 29.7
Samples: 4

Max nTPM: 36.4
Min nTPM: 26.7
Sample A Female 36.4
Sample B Female 27.9
Sample C Male 27.9
Sample D Male 26.7
Dorsal hippocampus
nTPM: 40.9
Samples: 4

Max nTPM: 56.4
Min nTPM: 31.2
Sample A Female 56.4
Sample B Female 43.9
Sample C Male 31.2
Sample D Male 32.0
Entorhinal cortex
nTPM: 29.9
Samples: 4

Max nTPM: 32.7
Min nTPM: 26.8
Sample A Female 27.5
Sample B Female 32.7
Sample C Male 32.6
Sample D Male 26.8
Ventral hippocampus
nTPM: 36.3
Samples: 4

Max nTPM: 46.4
Min nTPM: 23.3
Sample A Female 38.0
Sample B Female 23.3
Sample C Male 37.4
Sample D Male 46.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 98.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 85.8
Samples: 4

Max nTPM: 93.2
Min nTPM: 79.4
Sample A Male 79.8
Sample B Male 79.4
Sample C Female 93.2
Sample D Female 90.7
Hippocampal formation
nTPM: 98.6
Samples: 4

Max nTPM: 105.3
Min nTPM: 93.2
Sample A Male 101.9
Sample B Male 93.8
Sample C Female 105.3
Sample D Female 93.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.9
75750496 Antisense, RP_060518_04_H07, Mouse strain C57BL/6J (56 days, male) 9.4
72080175 Antisense, RP_051017_03_D01, Mouse strain C57BL/6J (56 days, male) 6.5

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