MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:704.1 nTPM
HPA Brain:390.7 nTPM
GTEx:704.1 nTPM
FANTOM5:17.2 Scaled Tags Per Million
Pig:320.0 nTPM
Mouse:345.3 nTPM
Allen mouse:14.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 390.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 327.4
2586 Male, age 75, left hemisphere 388.9
2666 Male, age 74, left hemisphere 369.2
1870 Female, age 42, unknown 366.7
2411 Female, age 72, unknown 321.2
2828 Female, age 72, unknown 321.1
1833 Male, age 53, unknown 317.5
1827 Male, age 72, unknown 307.3
1830 Male, age 51, unknown 303.4
2219 Male, age 76, both hemispheres 295.4
2019 Male, age 18, unknown 283.4
Dorsal raphe nucleus
nTPM: 373.2
2298 Female, age 72, unknown 403.7
2016 Female, age 72, unknown 394.2
2047 Male, age 72, unknown 377.8
1828 Male, age 53, unknown 370.8
2750 Male, age 76, both hemispheres 319.7
Inferior colliculus
nTPM: 338.4
1848 Female, age 42, unknown 347.3
2849 Male, age 72, unknown 346.9
1890 Male, age 53, unknown 339.7
2097 Female, age 72, unknown 319.5
Median raphe nucleus
nTPM: 333.7
2220 Male, age 76, midline 333.7
Periaquaductal grey, anterior
nTPM: 323.5
2502 Female, age 75, unknown 348.2
1947 Male, age 18, unknown 315.8
1795 Male, age 51, unknown 306.6
Periaquaductal grey, dorsal
nTPM: 337.8
1840 Male, age 53, unknown 404.4
1831 Male, age 72, unknown 330.0
2850 Male, age 76, both hemispheres 310.6
2464 Female, age 72, unknown 306.4
Periaquaductal grey, lateral
nTPM: 314.9
2053 Male, age 18, unknown 352.8
2140 Male, age 76, both hemispheres 312.5
2272 Male, age 74, both hemispheres 279.5
Pretectal area
nTPM: 292.6
2825 Male, age 18, unknown 353.3
2224 Female, age 72, unknown 343.3
2316 Male, age 76, right hemisphere 311.2
2407 Male, age 75, both hemispheres 307.9
2273 Male, age 74, both hemispheres 294.4
1817 Female, age 42, unknown 284.5
1815 Male, age 53, unknown 278.0
2007 Male, age 72, unknown 274.1
2667 Female, age 75, unknown 274.1
1816 Male, age 51, unknown 256.1
1944 Female, age 72, unknown 242.0
Red nucleus
nTPM: 319.1
2503 Female, age 72, unknown 381.8
1821 Female, age 72, unknown 365.2
1865 Male, age 51, unknown 344.9
2588 Male, age 74, left hemisphere 318.3
2725 Female, age 75, unknown 317.4
2769 Male, age 72, unknown 316.9
2227 Male, age 72, unknown 314.0
2584 Male, age 75, left hemisphere 314.0
1904 Male, age 53, unknown 313.8
1954 Female, age 42, unknown 296.8
2785 Male, age 18, unknown 276.6
2823 Male, age 76, right hemisphere 269.7
Substantia nigra
nTPM: 390.7
2699 Male, age 18, unknown 455.0
2665 Male, age 74, both hemispheres 452.3
1851 Male, age 51, unknown 444.7
2241 Male, age 72, unknown 421.6
1916 Female, age 42, unknown 417.3
2590 Female, age 75, unknown 378.9
2409 Female, age 72, unknown 371.3
1941 Male, age 53, unknown 343.0
2583 Male, age 75, right hemisphere 327.2
1889 Female, age 72, unknown 295.9
Superior colliculus
nTPM: 317.5
2664 Male, age 75, both hemispheres 385.5
2587 Male, age 74, left hemisphere 375.0
1839 Male, age 51, unknown 337.8
1995 Male, age 72, unknown 322.1
2668 Female, age 75, unknown 317.1
1913 Female, age 42, unknown 314.6
1796 Male, age 53, unknown 303.4
1895 Male, age 76, right hemisphere 295.2
2261 Male, age 18, unknown 264.7
2087 Female, age 72, unknown 259.3
Ventral tegmental area
nTPM: 361.0
1915 Female, age 42, unknown 427.2
2021 Male, age 53, unknown 378.9
2223 Female, age 72, unknown 360.5
2410 Female, age 72, unknown 346.0
1942 Male, age 51, unknown 345.0
2218 Male, age 76, both hemispheres 308.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 704.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 704.1
Samples: 139

Max nTPM: 1742.8
Min nTPM: 396.7
Std nTPM: 217.8
Median nTPM: 682.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1742.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1710.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1623.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1230.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1099.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1076.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1063.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1026.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1001.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 997.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 992.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.2
FF:10158-103A5 76 years, female 17.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 320.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 305.6
Samples: 4

Max nTPM: 415.3
Min nTPM: 255.9
Sample A Female 415.3
Sample B Female 291.2
Sample C Male 255.9
Sample D Male 259.9
Midbrain
nTPM: 302.6
Samples: 4

Max nTPM: 439.3
Min nTPM: 227.7
Sample A Female 439.3
Sample B Female 311.5
Sample C Male 232.0
Sample D Male 227.7
Periaqueductal gray
nTPM: 250.2
Samples: 3

Max nTPM: 270.1
Min nTPM: 228.6
Sample B Female 251.8
Sample C Male 270.1
Sample D Male 228.6
Superior colliculi
nTPM: 320.0
Samples: 4

Max nTPM: 394.9
Min nTPM: 261.0
Sample A Female 394.9
Sample B Female 332.4
Sample C Male 261.0
Sample D Male 291.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 345.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 345.4
Samples: 4

Max nTPM: 368.8
Min nTPM: 331.8
Sample A Male 368.8
Sample B Male 346.5
Sample C Female 331.8
Sample D Female 334.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.5
74819238 Antisense, RP_060315_02_C02, Mouse strain C57BL/6J (56 days, male) 17.7
68441520 Antisense, RP_041214_02_E05, Mouse strain C57BL/6J (56 days, male) 11.4

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