MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.1 nTPM
HPA Brain:17.2 nTPM
GTEx:24.1 nTPM
FANTOM5:30.5 Scaled Tags Per Million
Pig:53.3 nTPM
Mouse:20.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.4
2586 Male, age 75, left hemisphere 23.4
1827 Male, age 72, unknown 16.1
2666 Male, age 74, left hemisphere 15.7
1870 Female, age 42, unknown 14.4
2828 Female, age 72, unknown 14.0
2019 Male, age 18, unknown 13.1
2219 Male, age 76, both hemispheres 12.4
2411 Female, age 72, unknown 12.3
1830 Male, age 51, unknown 11.6
1833 Male, age 53, unknown 11.4
Dorsal raphe nucleus
nTPM: 13.9
2047 Male, age 72, unknown 15.4
2298 Female, age 72, unknown 15.4
1828 Male, age 53, unknown 14.7
2750 Male, age 76, both hemispheres 13.5
2016 Female, age 72, unknown 10.5
Inferior colliculus
nTPM: 12.2
2097 Female, age 72, unknown 14.8
1890 Male, age 53, unknown 12.6
2849 Male, age 72, unknown 10.7
1848 Female, age 42, unknown 10.5
Median raphe nucleus
nTPM: 15.9
2220 Male, age 76, midline 15.9
Periaquaductal grey, anterior
nTPM: 14.1
1795 Male, age 51, unknown 16.4
1947 Male, age 18, unknown 15.5
2502 Female, age 75, unknown 10.4
Periaquaductal grey, dorsal
nTPM: 11.0
1840 Male, age 53, unknown 12.7
2850 Male, age 76, both hemispheres 11.9
1831 Male, age 72, unknown 10.4
2464 Female, age 72, unknown 9.0
Periaquaductal grey, lateral
nTPM: 10.5
2272 Male, age 74, both hemispheres 11.5
2053 Male, age 18, unknown 10.7
2140 Male, age 76, both hemispheres 9.4
Pretectal area
nTPM: 13.0
2007 Male, age 72, unknown 16.5
1817 Female, age 42, unknown 15.9
1816 Male, age 51, unknown 15.6
1944 Female, age 72, unknown 14.4
1815 Male, age 53, unknown 14.2
2667 Female, age 75, unknown 13.9
2825 Male, age 18, unknown 12.8
2407 Male, age 75, both hemispheres 11.9
2224 Female, age 72, unknown 11.3
2316 Male, age 76, right hemisphere 9.9
2273 Male, age 74, both hemispheres 7.1
Red nucleus
nTPM: 13.4
1821 Female, age 72, unknown 15.4
2588 Male, age 74, left hemisphere 15.4
2725 Female, age 75, unknown 14.2
2769 Male, age 72, unknown 14.0
2785 Male, age 18, unknown 13.8
2227 Male, age 72, unknown 13.5
2503 Female, age 72, unknown 13.4
2584 Male, age 75, left hemisphere 12.9
1865 Male, age 51, unknown 12.6
1954 Female, age 42, unknown 12.3
1904 Male, age 53, unknown 12.2
2823 Male, age 76, right hemisphere 10.8
Substantia nigra
nTPM: 17.2
1916 Female, age 42, unknown 24.1
2665 Male, age 74, both hemispheres 19.1
2409 Female, age 72, unknown 18.1
1851 Male, age 51, unknown 17.9
2241 Male, age 72, unknown 17.4
1941 Male, age 53, unknown 16.8
1889 Female, age 72, unknown 16.7
2583 Male, age 75, right hemisphere 15.4
2699 Male, age 18, unknown 13.5
2590 Female, age 75, unknown 12.9
Superior colliculus
nTPM: 13.6
2668 Female, age 75, unknown 19.9
2261 Male, age 18, unknown 15.3
2664 Male, age 75, both hemispheres 15.0
1796 Male, age 53, unknown 14.9
2587 Male, age 74, left hemisphere 14.2
2087 Female, age 72, unknown 13.6
1895 Male, age 76, right hemisphere 13.2
1839 Male, age 51, unknown 11.1
1913 Female, age 42, unknown 10.3
1995 Male, age 72, unknown 8.5
Ventral tegmental area
nTPM: 14.8
1915 Female, age 42, unknown 16.9
2410 Female, age 72, unknown 16.4
2218 Male, age 76, both hemispheres 15.8
1942 Male, age 51, unknown 14.7
2223 Female, age 72, unknown 12.8
2021 Male, age 53, unknown 12.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.1
Samples: 139

Max nTPM: 59.1
Min nTPM: 5.6
Std nTPM: 10.8
Median nTPM: 22.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 59.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 55.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 49.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 49.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 47.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 45.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 43.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 42.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 42.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 41.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 41.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.5
FF:10158-103A5 76 years, female 30.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.9
Samples: 4

Max nTPM: 56.9
Min nTPM: 46.7
Sample A Female 52.1
Sample B Female 46.7
Sample C Male 47.9
Sample D Male 56.9
Midbrain
nTPM: 50.8
Samples: 4

Max nTPM: 55.6
Min nTPM: 44.1
Sample A Female 55.6
Sample B Female 54.1
Sample C Male 49.5
Sample D Male 44.1
Periaqueductal gray
nTPM: 47.5
Samples: 3

Max nTPM: 50.7
Min nTPM: 44.5
Sample B Female 50.7
Sample C Male 47.4
Sample D Male 44.5
Superior colliculi
nTPM: 53.3
Samples: 4

Max nTPM: 56.9
Min nTPM: 49.2
Sample A Female 56.9
Sample B Female 49.2
Sample C Male 52.5
Sample D Male 54.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.9
Samples: 4

Max nTPM: 22.9
Min nTPM: 15.8
Sample A Male 19.9
Sample B Male 15.8
Sample C Female 22.9
Sample D Female 21.1

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