MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.6 nTPM
HPA Brain:33.7 nTPM
GTEx:0.6 nTPM
FANTOM5:13.1 Scaled Tags Per Million
Pig:26.8 nTPM
Mouse:4.9 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.3
1830 Male, age 51, unknown 37.4
2411 Female, age 72, unknown 34.6
1833 Male, age 53, unknown 34.1
1870 Female, age 42, unknown 32.7
2019 Male, age 18, unknown 32.3
2828 Female, age 72, unknown 28.4
2666 Male, age 74, left hemisphere 28.2
2219 Male, age 76, both hemispheres 27.4
1827 Male, age 72, unknown 26.2
2586 Male, age 75, left hemisphere 21.2
Dorsal raphe nucleus
nTPM: 27.6
2016 Female, age 72, unknown 31.7
2750 Male, age 76, both hemispheres 30.1
1828 Male, age 53, unknown 27.9
2047 Male, age 72, unknown 26.6
2298 Female, age 72, unknown 21.7
Inferior colliculus
nTPM: 28.8
1890 Male, age 53, unknown 30.3
1848 Female, age 42, unknown 30.0
2849 Male, age 72, unknown 29.1
2097 Female, age 72, unknown 25.8
Median raphe nucleus
nTPM: 25.8
2220 Male, age 76, midline 25.8
Periaquaductal grey, anterior
nTPM: 26.3
2502 Female, age 75, unknown 30.4
1947 Male, age 18, unknown 26.1
1795 Male, age 51, unknown 22.5
Periaquaductal grey, dorsal
nTPM: 29.1
2850 Male, age 76, both hemispheres 32.8
2464 Female, age 72, unknown 32.2
1831 Male, age 72, unknown 25.9
1840 Male, age 53, unknown 25.4
Periaquaductal grey, lateral
nTPM: 28.5
2140 Male, age 76, both hemispheres 32.1
2272 Male, age 74, both hemispheres 27.6
2053 Male, age 18, unknown 25.9
Pretectal area
nTPM: 25.6
2273 Male, age 74, both hemispheres 30.2
2316 Male, age 76, right hemisphere 30.1
2667 Female, age 75, unknown 27.8
2825 Male, age 18, unknown 26.6
1815 Male, age 53, unknown 26.5
2224 Female, age 72, unknown 25.1
2407 Male, age 75, both hemispheres 24.8
1817 Female, age 42, unknown 23.5
1944 Female, age 72, unknown 23.2
2007 Male, age 72, unknown 22.9
1816 Male, age 51, unknown 20.3
Red nucleus
nTPM: 33.7
1865 Male, age 51, unknown 38.3
2503 Female, age 72, unknown 37.7
1904 Male, age 53, unknown 36.7
1954 Female, age 42, unknown 36.1
2785 Male, age 18, unknown 35.9
2769 Male, age 72, unknown 35.3
2823 Male, age 76, right hemisphere 35.1
2227 Male, age 72, unknown 34.8
1821 Female, age 72, unknown 32.0
2588 Male, age 74, left hemisphere 31.5
2725 Female, age 75, unknown 26.6
2584 Male, age 75, left hemisphere 24.7
Substantia nigra
nTPM: 27.1
2409 Female, age 72, unknown 33.7
2699 Male, age 18, unknown 29.5
2241 Male, age 72, unknown 29.0
2583 Male, age 75, right hemisphere 27.6
2590 Female, age 75, unknown 27.5
1889 Female, age 72, unknown 26.4
1851 Male, age 51, unknown 26.0
2665 Male, age 74, both hemispheres 26.0
1941 Male, age 53, unknown 24.7
1916 Female, age 42, unknown 20.4
Superior colliculus
nTPM: 27.6
1913 Female, age 42, unknown 35.4
1995 Male, age 72, unknown 33.0
1839 Male, age 51, unknown 29.2
1895 Male, age 76, right hemisphere 29.1
2587 Male, age 74, left hemisphere 28.9
2668 Female, age 75, unknown 26.3
2087 Female, age 72, unknown 25.1
1796 Male, age 53, unknown 24.2
2664 Male, age 75, both hemispheres 22.6
2261 Male, age 18, unknown 22.5
Ventral tegmental area
nTPM: 27.6
2410 Female, age 72, unknown 31.9
2223 Female, age 72, unknown 29.7
2021 Male, age 53, unknown 27.3
1942 Male, age 51, unknown 26.9
2218 Male, age 76, both hemispheres 25.6
1915 Female, age 42, unknown 24.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 0.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.6
Samples: 139

Max nTPM: 3.2
Min nTPM: 0.0
Std nTPM: 0.5
Median nTPM: 0.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 3.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 2.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 2.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 2.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 2.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 1.5
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 1.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 1.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.1
FF:10158-103A5 76 years, female 13.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.8
Samples: 4

Max nTPM: 33.4
Min nTPM: 20.8
Sample A Female 20.8
Sample B Female 29.8
Sample C Male 23.3
Sample D Male 33.4
Midbrain
nTPM: 24.5
Samples: 4

Max nTPM: 29.2
Min nTPM: 22.1
Sample A Female 24.4
Sample B Female 29.2
Sample C Male 22.4
Sample D Male 22.1
Periaqueductal gray
nTPM: 26.8
Samples: 3

Max nTPM: 29.1
Min nTPM: 23.6
Sample B Female 29.1
Sample C Male 23.6
Sample D Male 27.6
Superior colliculi
nTPM: 23.4
Samples: 4

Max nTPM: 26.7
Min nTPM: 19.4
Sample A Female 19.4
Sample B Female 26.7
Sample C Male 23.3
Sample D Male 24.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.0
Samples: 4

Max nTPM: 5.6
Min nTPM: 3.8
Sample A Male 3.8
Sample B Male 5.6
Sample C Female 5.2
Sample D Female 5.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
68269291 Antisense, RP_041129_01_E10, Mouse strain C57BL/6J (56 days, male) 2.5
69289021 Antisense, RP_050407_02_C03, Mouse strain C57BL/6J (56 days, male) 0.4

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