MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.4 nTPM
HPA Brain:50.8 nTPM
GTEx:37.4 nTPM
FANTOM5:82.6 Scaled Tags Per Million
Pig:79.4 nTPM
Mouse:95.8 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.1
2019 Male, age 18, unknown 51.2
1870 Female, age 42, unknown 51.0
1830 Male, age 51, unknown 50.8
1833 Male, age 53, unknown 49.7
2411 Female, age 72, unknown 48.3
1827 Male, age 72, unknown 46.1
2666 Male, age 74, left hemisphere 42.7
2219 Male, age 76, both hemispheres 42.6
2828 Female, age 72, unknown 41.2
2586 Male, age 75, left hemisphere 37.8
Dorsal raphe nucleus
nTPM: 48.3
2016 Female, age 72, unknown 50.9
2298 Female, age 72, unknown 49.7
1828 Male, age 53, unknown 49.2
2750 Male, age 76, both hemispheres 46.4
2047 Male, age 72, unknown 45.0
Inferior colliculus
nTPM: 45.7
1890 Male, age 53, unknown 47.0
2097 Female, age 72, unknown 46.4
1848 Female, age 42, unknown 45.6
2849 Male, age 72, unknown 44.0
Median raphe nucleus
nTPM: 44.9
2220 Male, age 76, midline 44.9
Periaquaductal grey, anterior
nTPM: 47.7
2502 Female, age 75, unknown 52.8
1947 Male, age 18, unknown 45.5
1795 Male, age 51, unknown 44.7
Periaquaductal grey, dorsal
nTPM: 46.6
2850 Male, age 76, both hemispheres 52.2
2464 Female, age 72, unknown 47.9
1840 Male, age 53, unknown 43.6
1831 Male, age 72, unknown 42.8
Periaquaductal grey, lateral
nTPM: 49.5
2272 Male, age 74, both hemispheres 52.3
2140 Male, age 76, both hemispheres 50.2
2053 Male, age 18, unknown 45.8
Pretectal area
nTPM: 47.4
2273 Male, age 74, both hemispheres 55.4
2007 Male, age 72, unknown 49.2
2407 Male, age 75, both hemispheres 48.9
1817 Female, age 42, unknown 48.6
2316 Male, age 76, right hemisphere 47.1
1816 Male, age 51, unknown 46.7
1944 Female, age 72, unknown 46.1
1815 Male, age 53, unknown 46.0
2224 Female, age 72, unknown 45.4
2667 Female, age 75, unknown 44.6
2825 Male, age 18, unknown 43.2
Red nucleus
nTPM: 50.8
1821 Female, age 72, unknown 57.9
2823 Male, age 76, right hemisphere 56.1
1904 Male, age 53, unknown 55.5
1954 Female, age 42, unknown 54.4
1865 Male, age 51, unknown 53.4
2785 Male, age 18, unknown 51.7
2227 Male, age 72, unknown 50.6
2769 Male, age 72, unknown 47.8
2503 Female, age 72, unknown 46.8
2584 Male, age 75, left hemisphere 46.4
2725 Female, age 75, unknown 44.8
2588 Male, age 74, left hemisphere 43.8
Substantia nigra
nTPM: 46.3
2241 Male, age 72, unknown 56.7
2590 Female, age 75, unknown 49.8
1941 Male, age 53, unknown 47.1
2699 Male, age 18, unknown 46.9
1851 Male, age 51, unknown 45.4
2409 Female, age 72, unknown 45.4
1889 Female, age 72, unknown 43.8
2583 Male, age 75, right hemisphere 43.7
1916 Female, age 42, unknown 43.2
2665 Male, age 74, both hemispheres 41.6
Superior colliculus
nTPM: 47.1
1913 Female, age 42, unknown 53.4
2587 Male, age 74, left hemisphere 52.4
2261 Male, age 18, unknown 50.0
1895 Male, age 76, right hemisphere 48.3
2668 Female, age 75, unknown 47.0
1995 Male, age 72, unknown 46.8
1839 Male, age 51, unknown 45.9
2087 Female, age 72, unknown 43.9
2664 Male, age 75, both hemispheres 42.7
1796 Male, age 53, unknown 41.0
Ventral tegmental area
nTPM: 47.4
2223 Female, age 72, unknown 57.3
2021 Male, age 53, unknown 46.6
2218 Male, age 76, both hemispheres 46.6
2410 Female, age 72, unknown 45.8
1942 Male, age 51, unknown 45.2
1915 Female, age 42, unknown 42.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.4
Samples: 139

Max nTPM: 73.9
Min nTPM: 17.8
Std nTPM: 8.2
Median nTPM: 36.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 73.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 67.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 57.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 55.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 52.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 51.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 51.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 51.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 51.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 51.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 49.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.6
FF:10158-103A5 76 years, female 82.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.2
Samples: 4

Max nTPM: 73.8
Min nTPM: 57.6
Sample A Female 73.8
Sample B Female 57.6
Sample C Male 69.5
Sample D Male 63.9
Midbrain
nTPM: 79.4
Samples: 4

Max nTPM: 126.3
Min nTPM: 46.7
Sample A Female 126.3
Sample B Female 78.1
Sample C Male 66.6
Sample D Male 46.7
Periaqueductal gray
nTPM: 73.1
Samples: 3

Max nTPM: 74.7
Min nTPM: 71.0
Sample B Female 71.0
Sample C Male 73.5
Sample D Male 74.7
Superior colliculi
nTPM: 62.3
Samples: 4

Max nTPM: 70.0
Min nTPM: 53.2
Sample A Female 65.9
Sample B Female 70.0
Sample C Male 53.2
Sample D Male 60.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 95.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 95.8
Samples: 4

Max nTPM: 104.0
Min nTPM: 89.4
Sample A Male 99.5
Sample B Male 90.2
Sample C Female 89.4
Sample D Female 104.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
69169511 Antisense, RP_050321_03_G01, Mouse strain C57BL/6J (56 days, male) 2.2

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