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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1159.3
nTPM
HPA Brain:
282.5
nTPM
GTEx:
1159.3
nTPM
FANTOM5:
34.4
Scaled Tags Per Million
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
282.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 251.6
2586
Male, age 75, left hemisphere
284.6
1870
Female, age 42, unknown
280.1
2666
Male, age 74, left hemisphere
268.8
2411
Female, age 72, unknown
258.3
1827
Male, age 72, unknown
252.7
1833
Male, age 53, unknown
251.1
2219
Male, age 76, both hemispheres
246.1
2828
Female, age 72, unknown
233.5
1830
Male, age 51, unknown
232.7
2019
Male, age 18, unknown
208.4
Dorsal raphe nucleus nTPM: 265.8
2298
Female, age 72, unknown
319.8
1828
Male, age 53, unknown
257.9
2047
Male, age 72, unknown
256.5
2016
Female, age 72, unknown
248.9
2750
Male, age 76, both hemispheres
245.7
Inferior colliculus nTPM: 282.5
2849
Male, age 72, unknown
303.5
2097
Female, age 72, unknown
296.5
1848
Female, age 42, unknown
265.2
1890
Male, age 53, unknown
264.8
Median raphe nucleus nTPM: 250.1
2220
Male, age 76, midline
250.1
Periaquaductal grey, anterior nTPM: 270.6
2502
Female, age 75, unknown
321.7
1947
Male, age 18, unknown
253.0
1795
Male, age 51, unknown
237.3
Periaquaductal grey, dorsal nTPM: 266.7
1840
Male, age 53, unknown
316.5
2464
Female, age 72, unknown
256.2
1831
Male, age 72, unknown
247.4
2850
Male, age 76, both hemispheres
246.7
Periaquaductal grey, lateral nTPM: 229.9
2053
Male, age 18, unknown
254.7
2140
Male, age 76, both hemispheres
226.3
2272
Male, age 74, both hemispheres
208.8
Pretectal area nTPM: 229.3
2224
Female, age 72, unknown
275.8
2316
Male, age 76, right hemisphere
247.3
1816
Male, age 51, unknown
246.1
1817
Female, age 42, unknown
241.6
2825
Male, age 18, unknown
240.5
1815
Male, age 53, unknown
224.8
2007
Male, age 72, unknown
222.5
2407
Male, age 75, both hemispheres
214.8
2273
Male, age 74, both hemispheres
210.5
1944
Female, age 72, unknown
207.9
2667
Female, age 75, unknown
190.7
Red nucleus nTPM: 248.2
2503
Female, age 72, unknown
311.4
1821
Female, age 72, unknown
278.1
1865
Male, age 51, unknown
262.4
2725
Female, age 75, unknown
257.8
2584
Male, age 75, left hemisphere
256.7
2769
Male, age 72, unknown
249.1
2227
Male, age 72, unknown
244.0
2785
Male, age 18, unknown
232.0
2588
Male, age 74, left hemisphere
229.0
1904
Male, age 53, unknown
228.1
1954
Female, age 42, unknown
221.5
2823
Male, age 76, right hemisphere
208.0
Substantia nigra nTPM: 264.3
2699
Male, age 18, unknown
318.4
1851
Male, age 51, unknown
305.1
2665
Male, age 74, both hemispheres
297.9
2241
Male, age 72, unknown
278.9
2590
Female, age 75, unknown
260.7
1916
Female, age 42, unknown
259.7
1941
Male, age 53, unknown
241.1
2409
Female, age 72, unknown
235.1
1889
Female, age 72, unknown
227.0
2583
Male, age 75, right hemisphere
219.5
Superior colliculus nTPM: 255.6
2587
Male, age 74, left hemisphere
294.1
1796
Male, age 53, unknown
275.7
2664
Male, age 75, both hemispheres
265.2
1913
Female, age 42, unknown
260.4
1895
Male, age 76, right hemisphere
256.1
1839
Male, age 51, unknown
253.1
1995
Male, age 72, unknown
250.9
2668
Female, age 75, unknown
244.9
2261
Male, age 18, unknown
243.0
2087
Female, age 72, unknown
212.2
Ventral tegmental area nTPM: 262.0
1915
Female, age 42, unknown
292.8
2223
Female, age 72, unknown
273.3
2021
Male, age 53, unknown
263.6
2410
Female, age 72, unknown
257.9
2218
Male, age 76, both hemispheres
244.1
1942
Male, age 51, unknown
240.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
1159.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1159.3
Samples: 139
Max nTPM: 3038.0
Min nTPM: 531.5
Std nTPM: 407.8
Median nTPM: 1098.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
3038.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
2886.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
2558.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
2492.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2200.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
2015.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1859.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1778.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
1759.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1759.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1733.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1682.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1658.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1585.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1573.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1569.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1526.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1519.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1455.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1433.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1428.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1424.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1420.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1408.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1398.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1396.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1375.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1374.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1362.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1359.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1343.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1331.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1331.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1309.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
1299.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1293.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1276.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1274.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1268.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1263.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1260.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1257.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
1256.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1255.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1253.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1248.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1244.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1239.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1234.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1233.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1233.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1225.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1220.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1209.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1204.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1202.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1199.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1197.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1161.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
1159.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1158.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1152.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1143.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
1139.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1133.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
1127.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1123.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1109.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1105.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1098.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1073.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1073.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1073.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1071.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1070.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1064.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1061.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1044.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1043.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1037.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1026.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1024.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1021.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
1011.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1010.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
997.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
989.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
989.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
968.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
964.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
956.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
956.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
951.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
935.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
934.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
924.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
921.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
920.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
912.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
895.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
893.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
875.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
870.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
870.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
862.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
862.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
861.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
856.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
846.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
840.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
837.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
836.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
828.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
828.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
823.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
822.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
817.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
812.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
799.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
795.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
789.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
779.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
772.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
770.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
765.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
758.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
751.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
744.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
735.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
735.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
735.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
724.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
718.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
703.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
692.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
622.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
622.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
601.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
531.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.