MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.7 nTPM
HPA Brain:16.9 nTPM
GTEx:18.7 nTPM
FANTOM5:2.1 Scaled Tags Per Million
Pig:0.6 nTPM
Mouse:0.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.7
2411 Female, age 72, unknown 19.5
2019 Male, age 18, unknown 19.0
1830 Male, age 51, unknown 16.0
2828 Female, age 72, unknown 15.5
1870 Female, age 42, unknown 14.9
2666 Male, age 74, left hemisphere 14.0
1833 Male, age 53, unknown 13.3
2219 Male, age 76, both hemispheres 12.4
2586 Male, age 75, left hemisphere 12.2
1827 Male, age 72, unknown 10.3
Dorsal raphe nucleus
nTPM: 12.7
2750 Male, age 76, both hemispheres 14.9
1828 Male, age 53, unknown 13.5
2298 Female, age 72, unknown 13.4
2016 Female, age 72, unknown 11.1
2047 Male, age 72, unknown 10.5
Inferior colliculus
nTPM: 10.3
2849 Male, age 72, unknown 11.8
1890 Male, age 53, unknown 11.4
1848 Female, age 42, unknown 9.9
2097 Female, age 72, unknown 7.9
Median raphe nucleus
nTPM: 5.1
2220 Male, age 76, midline 5.1
Periaquaductal grey, anterior
nTPM: 10.8
1795 Male, age 51, unknown 13.2
2502 Female, age 75, unknown 11.1
1947 Male, age 18, unknown 8.0
Periaquaductal grey, dorsal
nTPM: 15.2
2850 Male, age 76, both hemispheres 18.4
2464 Female, age 72, unknown 16.8
1840 Male, age 53, unknown 13.9
1831 Male, age 72, unknown 11.7
Periaquaductal grey, lateral
nTPM: 16.2
2140 Male, age 76, both hemispheres 19.0
2272 Male, age 74, both hemispheres 15.4
2053 Male, age 18, unknown 14.2
Pretectal area
nTPM: 11.5
2316 Male, age 76, right hemisphere 15.3
2224 Female, age 72, unknown 15.0
2407 Male, age 75, both hemispheres 15.0
1815 Male, age 53, unknown 12.5
2273 Male, age 74, both hemispheres 12.0
2667 Female, age 75, unknown 11.1
2825 Male, age 18, unknown 11.1
2007 Male, age 72, unknown 9.8
1817 Female, age 42, unknown 8.8
1944 Female, age 72, unknown 8.1
1816 Male, age 51, unknown 7.4
Red nucleus
nTPM: 16.9
2823 Male, age 76, right hemisphere 24.4
2227 Male, age 72, unknown 21.5
2588 Male, age 74, left hemisphere 20.8
1865 Male, age 51, unknown 18.7
2769 Male, age 72, unknown 18.0
1904 Male, age 53, unknown 17.0
2584 Male, age 75, left hemisphere 16.1
2785 Male, age 18, unknown 14.6
2503 Female, age 72, unknown 14.2
1821 Female, age 72, unknown 13.6
2725 Female, age 75, unknown 12.9
1954 Female, age 42, unknown 10.8
Substantia nigra
nTPM: 10.8
2699 Male, age 18, unknown 18.0
2590 Female, age 75, unknown 13.8
2583 Male, age 75, right hemisphere 12.8
2665 Male, age 74, both hemispheres 12.8
2241 Male, age 72, unknown 10.3
1851 Male, age 51, unknown 9.9
1889 Female, age 72, unknown 9.6
1941 Male, age 53, unknown 9.4
2409 Female, age 72, unknown 7.3
1916 Female, age 42, unknown 4.3
Superior colliculus
nTPM: 11.7
1913 Female, age 42, unknown 18.3
1995 Male, age 72, unknown 16.5
1895 Male, age 76, right hemisphere 13.0
2664 Male, age 75, both hemispheres 11.2
2087 Female, age 72, unknown 10.4
2668 Female, age 75, unknown 10.3
2587 Male, age 74, left hemisphere 9.9
1796 Male, age 53, unknown 9.7
1839 Male, age 51, unknown 9.5
2261 Male, age 18, unknown 8.2
Ventral tegmental area
nTPM: 9.4
2410 Female, age 72, unknown 11.7
1942 Male, age 51, unknown 10.8
2223 Female, age 72, unknown 10.2
2021 Male, age 53, unknown 10.1
1915 Female, age 42, unknown 7.4
2218 Male, age 76, both hemispheres 6.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.7
Samples: 139

Max nTPM: 59.7
Min nTPM: 2.8
Std nTPM: 9.3
Median nTPM: 17.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 59.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 50.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 46.1
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 43.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 42.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 39.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 39.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 39.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 38.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 35.8
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 35.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.1
FF:10158-103A5 76 years, female 2.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.6
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.5
Sample C Male 0.6
Sample D Male 0.9
Midbrain
nTPM: 0.7
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.5
Sample A Female 0.9
Sample B Female 0.7
Sample C Male 0.5
Sample D Male 0.5
Periaqueductal gray
nTPM: 0.5
Samples: 3

Max nTPM: 0.6
Min nTPM: 0.5
Sample B Female 0.5
Sample C Male 0.5
Sample D Male 0.6
Superior colliculi
nTPM: 0.6
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.4
Sample A Female 0.6
Sample B Female 0.4
Sample C Male 0.6
Sample D Male 0.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70611120 Antisense, RP_050630_02_A07, Mouse strain C57BL/6J (56 days, male) 0.1
72076545 Antisense, RP_051012_04_D04, Mouse strain C57BL/6J (56 days, male) 0.1

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