MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:354.8 nTPM
HPA Brain:286.4 nTPM
GTEx:354.8 nTPM
FANTOM5:103.9 Scaled Tags Per Million
Mouse:137.5 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 286.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 193.4
2586 Male, age 75, left hemisphere 340.0
2828 Female, age 72, unknown 302.4
1833 Male, age 53, unknown 190.8
1827 Male, age 72, unknown 183.3
1870 Female, age 42, unknown 175.7
2666 Male, age 74, left hemisphere 171.4
1830 Male, age 51, unknown 155.9
2019 Male, age 18, unknown 142.3
2411 Female, age 72, unknown 142.0
2219 Male, age 76, both hemispheres 130.0
Dorsal raphe nucleus
nTPM: 242.4
2016 Female, age 72, unknown 319.9
1828 Male, age 53, unknown 281.2
2298 Female, age 72, unknown 234.8
2047 Male, age 72, unknown 224.9
2750 Male, age 76, both hemispheres 151.1
Inferior colliculus
nTPM: 232.4
2849 Male, age 72, unknown 290.0
1848 Female, age 42, unknown 244.9
1890 Male, age 53, unknown 204.7
2097 Female, age 72, unknown 190.1
Median raphe nucleus
nTPM: 195.6
2220 Male, age 76, midline 195.6
Periaquaductal grey, anterior
nTPM: 210.1
2502 Female, age 75, unknown 234.9
1795 Male, age 51, unknown 219.7
1947 Male, age 18, unknown 175.5
Periaquaductal grey, dorsal
nTPM: 286.4
2850 Male, age 76, both hemispheres 378.1
1840 Male, age 53, unknown 324.4
1831 Male, age 72, unknown 229.0
2464 Female, age 72, unknown 214.3
Periaquaductal grey, lateral
nTPM: 263.2
2140 Male, age 76, both hemispheres 347.6
2053 Male, age 18, unknown 255.0
2272 Male, age 74, both hemispheres 187.1
Pretectal area
nTPM: 211.4
2825 Male, age 18, unknown 244.0
2273 Male, age 74, both hemispheres 243.8
2316 Male, age 76, right hemisphere 232.5
2667 Female, age 75, unknown 226.9
1944 Female, age 72, unknown 218.4
1817 Female, age 42, unknown 216.5
2224 Female, age 72, unknown 213.1
1816 Male, age 51, unknown 203.7
1815 Male, age 53, unknown 196.4
2407 Male, age 75, both hemispheres 193.1
2007 Male, age 72, unknown 136.8
Red nucleus
nTPM: 212.7
2769 Male, age 72, unknown 274.8
1821 Female, age 72, unknown 257.1
2227 Male, age 72, unknown 253.9
2503 Female, age 72, unknown 245.1
1954 Female, age 42, unknown 218.8
2588 Male, age 74, left hemisphere 206.3
2823 Male, age 76, right hemisphere 199.0
1904 Male, age 53, unknown 195.5
1865 Male, age 51, unknown 195.0
2725 Female, age 75, unknown 182.8
2584 Male, age 75, left hemisphere 170.3
2785 Male, age 18, unknown 154.0
Substantia nigra
nTPM: 247.9
2699 Male, age 18, unknown 452.7
1916 Female, age 42, unknown 314.4
1851 Male, age 51, unknown 296.1
2665 Male, age 74, both hemispheres 234.5
2590 Female, age 75, unknown 214.8
1889 Female, age 72, unknown 211.0
2583 Male, age 75, right hemisphere 201.3
2241 Male, age 72, unknown 194.3
2409 Female, age 72, unknown 183.7
1941 Male, age 53, unknown 175.8
Superior colliculus
nTPM: 223.5
2664 Male, age 75, both hemispheres 296.0
1995 Male, age 72, unknown 261.8
1796 Male, age 53, unknown 254.2
2668 Female, age 75, unknown 228.9
1913 Female, age 42, unknown 212.6
2261 Male, age 18, unknown 207.3
1839 Male, age 51, unknown 205.1
2087 Female, age 72, unknown 204.9
2587 Male, age 74, left hemisphere 187.9
1895 Male, age 76, right hemisphere 176.0
Ventral tegmental area
nTPM: 211.0
1915 Female, age 42, unknown 243.6
1942 Male, age 51, unknown 224.0
2021 Male, age 53, unknown 218.2
2410 Female, age 72, unknown 198.2
2218 Male, age 76, both hemispheres 196.1
2223 Female, age 72, unknown 186.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 354.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 354.8
Samples: 139

Max nTPM: 1027.6
Min nTPM: 36.6
Std nTPM: 176.9
Median nTPM: 328.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1027.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 838.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 750.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 731.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 715.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 715.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 682.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 670.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 668.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 658.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 652.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.9
FF:10158-103A5 76 years, female 103.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 137.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 137.5
Samples: 4

Max nTPM: 160.0
Min nTPM: 117.1
Sample A Male 160.0
Sample B Male 117.1
Sample C Female 124.9
Sample D Female 148.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68632918 Antisense, RP_050125_02_B01, Mouse strain C57BL/6J (56 days, male) 0.4

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