MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.0 nTPM
HPA Brain:40.9 nTPM
GTEx:2.0 nTPM
FANTOM5:2.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.8
2219 Male, age 76, both hemispheres 29.9
1827 Male, age 72, unknown 25.3
2411 Female, age 72, unknown 24.6
1870 Female, age 42, unknown 23.5
2019 Male, age 18, unknown 21.8
2586 Male, age 75, left hemisphere 21.2
2828 Female, age 72, unknown 20.5
1833 Male, age 53, unknown 19.4
1830 Male, age 51, unknown 18.0
2666 Male, age 74, left hemisphere 13.9
Dorsal raphe nucleus
nTPM: 35.3
2298 Female, age 72, unknown 66.0
2047 Male, age 72, unknown 29.0
1828 Male, age 53, unknown 28.8
2016 Female, age 72, unknown 27.9
2750 Male, age 76, both hemispheres 24.8
Inferior colliculus
nTPM: 37.2
2097 Female, age 72, unknown 54.7
1890 Male, age 53, unknown 32.1
2849 Male, age 72, unknown 31.9
1848 Female, age 42, unknown 30.1
Median raphe nucleus
nTPM: 27.0
2220 Male, age 76, midline 27.0
Periaquaductal grey, anterior
nTPM: 40.9
2502 Female, age 75, unknown 50.6
1795 Male, age 51, unknown 37.1
1947 Male, age 18, unknown 35.1
Periaquaductal grey, dorsal
nTPM: 28.4
1840 Male, age 53, unknown 35.3
1831 Male, age 72, unknown 26.8
2850 Male, age 76, both hemispheres 26.7
2464 Female, age 72, unknown 24.8
Periaquaductal grey, lateral
nTPM: 31.1
2140 Male, age 76, both hemispheres 33.4
2272 Male, age 74, both hemispheres 32.5
2053 Male, age 18, unknown 27.3
Pretectal area
nTPM: 30.7
2224 Female, age 72, unknown 56.2
2273 Male, age 74, both hemispheres 41.8
2007 Male, age 72, unknown 33.4
1816 Male, age 51, unknown 31.2
1817 Female, age 42, unknown 31.1
2667 Female, age 75, unknown 30.7
2316 Male, age 76, right hemisphere 30.6
2825 Male, age 18, unknown 29.0
1944 Female, age 72, unknown 23.6
1815 Male, age 53, unknown 21.8
2407 Male, age 75, both hemispheres 8.9
Red nucleus
nTPM: 17.6
2725 Female, age 75, unknown 24.4
2503 Female, age 72, unknown 20.6
2823 Male, age 76, right hemisphere 20.5
2769 Male, age 72, unknown 19.6
2227 Male, age 72, unknown 19.5
2785 Male, age 18, unknown 19.0
1954 Female, age 42, unknown 16.0
2588 Male, age 74, left hemisphere 15.8
1821 Female, age 72, unknown 15.5
2584 Male, age 75, left hemisphere 14.7
1904 Male, age 53, unknown 13.3
1865 Male, age 51, unknown 12.5
Substantia nigra
nTPM: 16.6
2665 Male, age 74, both hemispheres 25.9
1889 Female, age 72, unknown 22.9
2590 Female, age 75, unknown 21.2
1916 Female, age 42, unknown 18.1
1941 Male, age 53, unknown 17.3
2699 Male, age 18, unknown 16.1
1851 Male, age 51, unknown 15.6
2241 Male, age 72, unknown 12.7
2583 Male, age 75, right hemisphere 10.5
2409 Female, age 72, unknown 6.1
Superior colliculus
nTPM: 22.4
1796 Male, age 53, unknown 34.1
1895 Male, age 76, right hemisphere 29.6
1839 Male, age 51, unknown 28.5
2587 Male, age 74, left hemisphere 24.3
2261 Male, age 18, unknown 23.5
2087 Female, age 72, unknown 21.8
1913 Female, age 42, unknown 19.8
1995 Male, age 72, unknown 19.7
2664 Male, age 75, both hemispheres 15.0
2668 Female, age 75, unknown 7.8
Ventral tegmental area
nTPM: 24.3
1942 Male, age 51, unknown 28.8
2218 Male, age 76, both hemispheres 28.0
2021 Male, age 53, unknown 25.6
2223 Female, age 72, unknown 22.0
1915 Female, age 42, unknown 21.6
2410 Female, age 72, unknown 19.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.0
Samples: 139

Max nTPM: 9.3
Min nTPM: 0.0
Std nTPM: 1.6
Median nTPM: 1.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 9.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 8.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 6.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 6.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 5.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 5.6
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 5.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 4.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 4.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 4.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 4.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.5
FF:10158-103A5 76 years, female 2.5

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