MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.5 nTPM
HPA Brain:14.9 nTPM
GTEx:5.5 nTPM
FANTOM5:34.0 Scaled Tags Per Million
Pig:11.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.2
1830 Male, age 51, unknown 16.9
2666 Male, age 74, left hemisphere 15.8
2411 Female, age 72, unknown 15.3
2019 Male, age 18, unknown 14.6
2828 Female, age 72, unknown 13.8
1833 Male, age 53, unknown 12.7
2219 Male, age 76, both hemispheres 12.5
1827 Male, age 72, unknown 11.0
2586 Male, age 75, left hemisphere 10.1
1870 Female, age 42, unknown 9.4
Dorsal raphe nucleus
nTPM: 14.1
2047 Male, age 72, unknown 15.2
2016 Female, age 72, unknown 14.7
2750 Male, age 76, both hemispheres 14.7
1828 Male, age 53, unknown 13.1
2298 Female, age 72, unknown 12.7
Inferior colliculus
nTPM: 11.1
1848 Female, age 42, unknown 12.5
1890 Male, age 53, unknown 11.2
2849 Male, age 72, unknown 10.9
2097 Female, age 72, unknown 9.6
Median raphe nucleus
nTPM: 12.7
2220 Male, age 76, midline 12.7
Periaquaductal grey, anterior
nTPM: 10.3
1795 Male, age 51, unknown 12.0
1947 Male, age 18, unknown 9.9
2502 Female, age 75, unknown 9.1
Periaquaductal grey, dorsal
nTPM: 12.5
1831 Male, age 72, unknown 14.2
2850 Male, age 76, both hemispheres 12.5
2464 Female, age 72, unknown 11.7
1840 Male, age 53, unknown 11.4
Periaquaductal grey, lateral
nTPM: 14.0
2053 Male, age 18, unknown 14.1
2140 Male, age 76, both hemispheres 14.0
2272 Male, age 74, both hemispheres 13.9
Pretectal area
nTPM: 12.1
2407 Male, age 75, both hemispheres 19.2
2316 Male, age 76, right hemisphere 17.6
2273 Male, age 74, both hemispheres 12.8
1944 Female, age 72, unknown 12.3
2825 Male, age 18, unknown 12.2
1815 Male, age 53, unknown 11.4
2007 Male, age 72, unknown 10.4
2667 Female, age 75, unknown 10.4
2224 Female, age 72, unknown 10.3
1817 Female, age 42, unknown 8.7
1816 Male, age 51, unknown 8.3
Red nucleus
nTPM: 12.2
2584 Male, age 75, left hemisphere 14.6
1904 Male, age 53, unknown 14.1
2823 Male, age 76, right hemisphere 13.7
1865 Male, age 51, unknown 13.4
2227 Male, age 72, unknown 13.2
2769 Male, age 72, unknown 12.8
2785 Male, age 18, unknown 12.5
2503 Female, age 72, unknown 11.0
2725 Female, age 75, unknown 10.8
1954 Female, age 42, unknown 10.1
1821 Female, age 72, unknown 10.0
2588 Male, age 74, left hemisphere 10.0
Substantia nigra
nTPM: 14.9
2590 Female, age 75, unknown 22.0
2665 Male, age 74, both hemispheres 18.8
2583 Male, age 75, right hemisphere 17.2
2699 Male, age 18, unknown 15.8
1941 Male, age 53, unknown 14.8
2409 Female, age 72, unknown 14.2
1916 Female, age 42, unknown 13.2
1851 Male, age 51, unknown 12.1
2241 Male, age 72, unknown 11.2
1889 Female, age 72, unknown 10.2
Superior colliculus
nTPM: 13.1
1995 Male, age 72, unknown 15.8
2664 Male, age 75, both hemispheres 15.4
1913 Female, age 42, unknown 14.9
2587 Male, age 74, left hemisphere 14.8
1839 Male, age 51, unknown 12.6
2668 Female, age 75, unknown 12.1
1796 Male, age 53, unknown 11.8
2087 Female, age 72, unknown 11.8
1895 Male, age 76, right hemisphere 11.3
2261 Male, age 18, unknown 10.2
Ventral tegmental area
nTPM: 12.9
2021 Male, age 53, unknown 14.5
1942 Male, age 51, unknown 13.4
2223 Female, age 72, unknown 13.3
2218 Male, age 76, both hemispheres 12.6
1915 Female, age 42, unknown 12.4
2410 Female, age 72, unknown 11.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.5
Samples: 139

Max nTPM: 27.1
Min nTPM: 0.1
Std nTPM: 4.4
Median nTPM: 4.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 27.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 22.9
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 19.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 18.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 17.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 16.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 16.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 15.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 13.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 12.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 11.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.0
FF:10158-103A5 76 years, female 34.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.8
Samples: 4

Max nTPM: 10.3
Min nTPM: 7.6
Sample A Female 8.1
Sample B Female 9.1
Sample C Male 10.3
Sample D Male 7.6
Midbrain
nTPM: 6.6
Samples: 4

Max nTPM: 10.8
Min nTPM: 4.4
Sample A Female 5.5
Sample B Female 10.8
Sample C Male 4.4
Sample D Male 5.7
Periaqueductal gray
nTPM: 11.9
Samples: 3

Max nTPM: 14.8
Min nTPM: 10.2
Sample B Female 10.2
Sample C Male 14.8
Sample D Male 10.8
Superior colliculi
nTPM: 4.8
Samples: 4

Max nTPM: 6.1
Min nTPM: 3.3
Sample A Female 6.1
Sample B Female 3.3
Sample C Male 4.6
Sample D Male 5.2

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