MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.7 nTPM
HPA Brain:15.0 nTPM
GTEx:21.7 nTPM
FANTOM5:32.3 Scaled Tags Per Million
Pig:16.6 nTPM
Mouse:18.0 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.1
2586 Male, age 75, left hemisphere 15.3
2411 Female, age 72, unknown 15.2
2828 Female, age 72, unknown 15.0
1870 Female, age 42, unknown 14.9
1830 Male, age 51, unknown 14.5
2019 Male, age 18, unknown 14.3
1833 Male, age 53, unknown 13.5
1827 Male, age 72, unknown 12.4
2666 Male, age 74, left hemisphere 10.8
2219 Male, age 76, both hemispheres 5.5
Dorsal raphe nucleus
nTPM: 12.9
2750 Male, age 76, both hemispheres 16.4
2047 Male, age 72, unknown 13.1
2298 Female, age 72, unknown 12.9
1828 Male, age 53, unknown 11.7
2016 Female, age 72, unknown 10.5
Inferior colliculus
nTPM: 12.1
1848 Female, age 42, unknown 14.9
2849 Male, age 72, unknown 13.0
1890 Male, age 53, unknown 11.7
2097 Female, age 72, unknown 8.8
Median raphe nucleus
nTPM: 15.0
2220 Male, age 76, midline 15.0
Periaquaductal grey, anterior
nTPM: 13.6
2502 Female, age 75, unknown 15.3
1947 Male, age 18, unknown 14.0
1795 Male, age 51, unknown 11.3
Periaquaductal grey, dorsal
nTPM: 11.6
1831 Male, age 72, unknown 13.2
1840 Male, age 53, unknown 13.0
2850 Male, age 76, both hemispheres 11.9
2464 Female, age 72, unknown 8.3
Periaquaductal grey, lateral
nTPM: 10.6
2272 Male, age 74, both hemispheres 11.9
2053 Male, age 18, unknown 11.0
2140 Male, age 76, both hemispheres 8.9
Pretectal area
nTPM: 11.1
1816 Male, age 51, unknown 13.8
2007 Male, age 72, unknown 12.9
2407 Male, age 75, both hemispheres 12.4
1817 Female, age 42, unknown 12.1
1944 Female, age 72, unknown 11.6
2825 Male, age 18, unknown 11.6
2273 Male, age 74, both hemispheres 11.2
2667 Female, age 75, unknown 11.0
1815 Male, age 53, unknown 10.0
2224 Female, age 72, unknown 8.2
2316 Male, age 76, right hemisphere 7.9
Red nucleus
nTPM: 14.7
1904 Male, age 53, unknown 22.6
1821 Female, age 72, unknown 18.4
2823 Male, age 76, right hemisphere 14.8
2227 Male, age 72, unknown 14.5
2588 Male, age 74, left hemisphere 14.5
1954 Female, age 42, unknown 14.4
2503 Female, age 72, unknown 14.1
1865 Male, age 51, unknown 14.0
2584 Male, age 75, left hemisphere 13.5
2785 Male, age 18, unknown 12.9
2725 Female, age 75, unknown 12.8
2769 Male, age 72, unknown 10.2
Substantia nigra
nTPM: 12.5
2409 Female, age 72, unknown 16.1
2665 Male, age 74, both hemispheres 14.5
2590 Female, age 75, unknown 14.2
2699 Male, age 18, unknown 13.8
1916 Female, age 42, unknown 13.0
1851 Male, age 51, unknown 12.5
1889 Female, age 72, unknown 12.3
2241 Male, age 72, unknown 11.8
2583 Male, age 75, right hemisphere 10.8
1941 Male, age 53, unknown 6.4
Superior colliculus
nTPM: 12.6
1913 Female, age 42, unknown 16.7
2664 Male, age 75, both hemispheres 14.8
1796 Male, age 53, unknown 14.1
1895 Male, age 76, right hemisphere 14.1
1995 Male, age 72, unknown 12.5
2587 Male, age 74, left hemisphere 11.7
1839 Male, age 51, unknown 11.4
2668 Female, age 75, unknown 10.7
2087 Female, age 72, unknown 10.6
2261 Male, age 18, unknown 9.7
Ventral tegmental area
nTPM: 12.5
2410 Female, age 72, unknown 14.9
1915 Female, age 42, unknown 14.5
2021 Male, age 53, unknown 13.0
2218 Male, age 76, both hemispheres 12.7
1942 Male, age 51, unknown 11.4
2223 Female, age 72, unknown 8.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.7
Samples: 139

Max nTPM: 39.4
Min nTPM: 12.1
Std nTPM: 4.7
Median nTPM: 21.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 39.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 36.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 36.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 35.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 35.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 30.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 30.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 30.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 28.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 28.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 27.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.3
FF:10158-103A5 76 years, female 32.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.6
Samples: 4

Max nTPM: 22.2
Min nTPM: 14.1
Sample A Female 14.1
Sample B Female 14.7
Sample C Male 15.2
Sample D Male 22.2
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 20.0
Min nTPM: 13.6
Sample A Female 20.0
Sample B Female 14.0
Sample C Male 13.6
Sample D Male 15.1
Periaqueductal gray
nTPM: 15.2
Samples: 3

Max nTPM: 15.5
Min nTPM: 14.8
Sample B Female 15.2
Sample C Male 15.5
Sample D Male 14.8
Superior colliculi
nTPM: 14.7
Samples: 4

Max nTPM: 16.5
Min nTPM: 13.7
Sample A Female 13.7
Sample B Female 14.9
Sample C Male 13.8
Sample D Male 16.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.1
Samples: 4

Max nTPM: 19.2
Min nTPM: 15.7
Sample A Male 18.7
Sample B Male 18.6
Sample C Female 15.7
Sample D Female 19.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
71616350 Antisense, RP_050927_02_G04, Mouse strain C57BL/6J (56 days, male) 2.7

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