MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.2 nTPM
HPA Brain:12.7 nTPM
GTEx:1.2 nTPM
FANTOM5:1.1 Scaled Tags Per Million
Pig:8.1 nTPM
Mouse:3.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.6
2666 Male, age 74, left hemisphere 13.5
2019 Male, age 18, unknown 11.5
1827 Male, age 72, unknown 8.1
2828 Female, age 72, unknown 7.6
2586 Male, age 75, left hemisphere 7.3
2411 Female, age 72, unknown 7.0
1870 Female, age 42, unknown 6.6
1830 Male, age 51, unknown 5.2
2219 Male, age 76, both hemispheres 5.2
1833 Male, age 53, unknown 4.4
Dorsal raphe nucleus
nTPM: 4.5
1828 Male, age 53, unknown 6.6
2298 Female, age 72, unknown 6.2
2047 Male, age 72, unknown 3.4
2016 Female, age 72, unknown 3.1
2750 Male, age 76, both hemispheres 3.0
Inferior colliculus
nTPM: 7.5
2097 Female, age 72, unknown 10.0
1848 Female, age 42, unknown 7.2
2849 Male, age 72, unknown 7.2
1890 Male, age 53, unknown 5.5
Median raphe nucleus
nTPM: 3.7
2220 Male, age 76, midline 3.7
Periaquaductal grey, anterior
nTPM: 11.0
2502 Female, age 75, unknown 12.8
1795 Male, age 51, unknown 11.3
1947 Male, age 18, unknown 9.0
Periaquaductal grey, dorsal
nTPM: 6.3
1831 Male, age 72, unknown 7.2
2464 Female, age 72, unknown 7.1
1840 Male, age 53, unknown 6.5
2850 Male, age 76, both hemispheres 4.6
Periaquaductal grey, lateral
nTPM: 5.5
2140 Male, age 76, both hemispheres 6.8
2053 Male, age 18, unknown 5.4
2272 Male, age 74, both hemispheres 4.2
Pretectal area
nTPM: 12.7
1816 Male, age 51, unknown 24.0
1944 Female, age 72, unknown 20.4
2007 Male, age 72, unknown 19.1
1817 Female, age 42, unknown 18.4
1815 Male, age 53, unknown 14.3
2667 Female, age 75, unknown 11.0
2316 Male, age 76, right hemisphere 8.7
2224 Female, age 72, unknown 7.2
2273 Male, age 74, both hemispheres 5.7
2407 Male, age 75, both hemispheres 5.3
2825 Male, age 18, unknown 5.3
Red nucleus
nTPM: 3.6
2785 Male, age 18, unknown 11.5
2584 Male, age 75, left hemisphere 6.6
2588 Male, age 74, left hemisphere 3.9
2227 Male, age 72, unknown 3.0
2769 Male, age 72, unknown 3.0
2823 Male, age 76, right hemisphere 2.6
1821 Female, age 72, unknown 2.5
1954 Female, age 42, unknown 2.4
2503 Female, age 72, unknown 2.3
1865 Male, age 51, unknown 2.1
2725 Female, age 75, unknown 1.8
1904 Male, age 53, unknown 1.3
Substantia nigra
nTPM: 4.1
1889 Female, age 72, unknown 12.3
1941 Male, age 53, unknown 7.6
2583 Male, age 75, right hemisphere 3.8
2665 Male, age 74, both hemispheres 3.8
2590 Female, age 75, unknown 2.7
1851 Male, age 51, unknown 2.6
2409 Female, age 72, unknown 2.6
2241 Male, age 72, unknown 2.4
2699 Male, age 18, unknown 1.4
1916 Female, age 42, unknown 1.3
Superior colliculus
nTPM: 10.3
2087 Female, age 72, unknown 17.6
2668 Female, age 75, unknown 15.4
2664 Male, age 75, both hemispheres 11.0
1913 Female, age 42, unknown 9.7
1895 Male, age 76, right hemisphere 9.4
2261 Male, age 18, unknown 8.8
1839 Male, age 51, unknown 8.6
1796 Male, age 53, unknown 8.0
1995 Male, age 72, unknown 7.8
2587 Male, age 74, left hemisphere 6.8
Ventral tegmental area
nTPM: 3.5
2218 Male, age 76, both hemispheres 4.9
1942 Male, age 51, unknown 3.9
2021 Male, age 53, unknown 3.9
1915 Female, age 42, unknown 3.2
2410 Female, age 72, unknown 3.0
2223 Female, age 72, unknown 2.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.2
Samples: 139

Max nTPM: 15.8
Min nTPM: 0.0
Std nTPM: 1.8
Median nTPM: 0.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 15.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 9.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 8.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 5.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 4.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 4.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 3.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 3.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 2.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 2.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 2.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.1
FF:10158-103A5 76 years, female 1.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.6
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.2
Sample A Female 1.2
Sample B Female 1.7
Sample C Male 1.6
Sample D Male 1.7
Midbrain
nTPM: 4.1
Samples: 4

Max nTPM: 10.2
Min nTPM: 1.7
Sample A Female 2.0
Sample B Female 2.6
Sample C Male 1.7
Sample D Male 10.2
Periaqueductal gray
nTPM: 2.3
Samples: 3

Max nTPM: 2.7
Min nTPM: 2.0
Sample B Female 2.7
Sample C Male 2.3
Sample D Male 2.0
Superior colliculi
nTPM: 8.1
Samples: 4

Max nTPM: 10.4
Min nTPM: 4.8
Sample A Female 9.0
Sample B Female 10.4
Sample C Male 8.1
Sample D Male 4.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.9
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.5
Sample A Male 3.7
Sample B Male 3.5
Sample C Female 4.3
Sample D Female 4.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69288339 Antisense, RP_050331_04_F01, Mouse strain C57BL/6J (56 days, male) 0.4

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