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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
26.5
nTPM
FANTOM5:
14.9
Scaled Tags Per Million
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
26.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 18.6
1870
Female, age 42, unknown
31.4
2411
Female, age 72, unknown
30.7
1833
Male, age 53, unknown
22.2
2019
Male, age 18, unknown
21.7
1830
Male, age 51, unknown
18.1
2828
Female, age 72, unknown
17.6
1827
Male, age 72, unknown
16.2
2219
Male, age 76, both hemispheres
12.0
2666
Male, age 74, left hemisphere
9.1
2586
Male, age 75, left hemisphere
7.3
Dorsal raphe nucleus nTPM: 21.0
2750
Male, age 76, both hemispheres
28.0
2298
Female, age 72, unknown
26.9
1828
Male, age 53, unknown
24.5
2016
Female, age 72, unknown
14.9
2047
Male, age 72, unknown
10.7
Inferior colliculus nTPM: 16.1
1848
Female, age 42, unknown
18.9
2097
Female, age 72, unknown
18.0
2849
Male, age 72, unknown
14.5
1890
Male, age 53, unknown
13.1
Median raphe nucleus nTPM: 17.0
2220
Male, age 76, midline
17.0
Periaquaductal grey, anterior nTPM: 14.6
1947
Male, age 18, unknown
16.2
2502
Female, age 75, unknown
16.2
1795
Male, age 51, unknown
11.3
Periaquaductal grey, dorsal nTPM: 16.3
2850
Male, age 76, both hemispheres
22.8
2464
Female, age 72, unknown
15.9
1840
Male, age 53, unknown
13.9
1831
Male, age 72, unknown
12.6
Periaquaductal grey, lateral nTPM: 17.7
2272
Male, age 74, both hemispheres
29.6
2053
Male, age 18, unknown
12.1
2140
Male, age 76, both hemispheres
11.3
Pretectal area nTPM: 17.8
1817
Female, age 42, unknown
25.0
2273
Male, age 74, both hemispheres
24.9
1815
Male, age 53, unknown
23.0
2224
Female, age 72, unknown
21.4
2007
Male, age 72, unknown
18.8
1944
Female, age 72, unknown
15.0
2316
Male, age 76, right hemisphere
15.0
2667
Female, age 75, unknown
14.8
1816
Male, age 51, unknown
14.6
2825
Male, age 18, unknown
13.5
2407
Male, age 75, both hemispheres
10.0
Red nucleus nTPM: 26.5
1821
Female, age 72, unknown
56.5
2503
Female, age 72, unknown
32.7
1954
Female, age 42, unknown
29.6
1865
Male, age 51, unknown
28.5
1904
Male, age 53, unknown
28.2
2785
Male, age 18, unknown
26.9
2769
Male, age 72, unknown
25.1
2227
Male, age 72, unknown
25.0
2725
Female, age 75, unknown
22.9
2823
Male, age 76, right hemisphere
20.9
2588
Male, age 74, left hemisphere
11.5
2584
Male, age 75, left hemisphere
10.3
Substantia nigra nTPM: 18.3
1889
Female, age 72, unknown
26.9
2241
Male, age 72, unknown
25.1
1916
Female, age 42, unknown
24.6
1851
Male, age 51, unknown
23.9
2699
Male, age 18, unknown
19.8
1941
Male, age 53, unknown
18.4
2590
Female, age 75, unknown
15.1
2665
Male, age 74, both hemispheres
13.9
2583
Male, age 75, right hemisphere
13.7
2409
Female, age 72, unknown
1.6
Superior colliculus nTPM: 16.9
1913
Female, age 42, unknown
27.5
1995
Male, age 72, unknown
23.2
2587
Male, age 74, left hemisphere
21.7
2668
Female, age 75, unknown
18.4
1895
Male, age 76, right hemisphere
17.3
1839
Male, age 51, unknown
16.7
2261
Male, age 18, unknown
13.5
1796
Male, age 53, unknown
12.2
2087
Female, age 72, unknown
11.1
2664
Male, age 75, both hemispheres
7.8
Ventral tegmental area nTPM: 21.1
2223
Female, age 72, unknown
31.9
2410
Female, age 72, unknown
27.0
1915
Female, age 42, unknown
21.0
2218
Male, age 76, both hemispheres
19.2
1942
Male, age 51, unknown
15.2
2021
Male, age 53, unknown
12.3
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
The Human Protein Atlas project is funded
