MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:40.9 nTPM
FANTOM5:507.1 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.0
2828 Female, age 72, unknown 45.4
1870 Female, age 42, unknown 30.3
1827 Male, age 72, unknown 27.3
2411 Female, age 72, unknown 26.2
1833 Male, age 53, unknown 24.8
2019 Male, age 18, unknown 24.2
1830 Male, age 51, unknown 24.0
2219 Male, age 76, both hemispheres 20.8
2586 Male, age 75, left hemisphere 8.7
2666 Male, age 74, left hemisphere 8.0
Dorsal raphe nucleus
nTPM: 32.7
2298 Female, age 72, unknown 50.7
2750 Male, age 76, both hemispheres 35.0
2047 Male, age 72, unknown 27.7
1828 Male, age 53, unknown 26.5
2016 Female, age 72, unknown 23.6
Inferior colliculus
nTPM: 23.7
1848 Female, age 42, unknown 25.4
2097 Female, age 72, unknown 24.4
1890 Male, age 53, unknown 22.8
2849 Male, age 72, unknown 22.1
Median raphe nucleus
nTPM: 24.0
2220 Male, age 76, midline 24.0
Periaquaductal grey, anterior
nTPM: 35.8
2502 Female, age 75, unknown 42.4
1947 Male, age 18, unknown 33.7
1795 Male, age 51, unknown 31.3
Periaquaductal grey, dorsal
nTPM: 22.7
2464 Female, age 72, unknown 23.1
2850 Male, age 76, both hemispheres 23.1
1831 Male, age 72, unknown 22.9
1840 Male, age 53, unknown 21.8
Periaquaductal grey, lateral
nTPM: 40.9
2140 Male, age 76, both hemispheres 42.9
2272 Male, age 74, both hemispheres 42.3
2053 Male, age 18, unknown 37.4
Pretectal area
nTPM: 31.0
2667 Female, age 75, unknown 58.5
2273 Male, age 74, both hemispheres 48.2
2407 Male, age 75, both hemispheres 34.8
2316 Male, age 76, right hemisphere 30.5
2825 Male, age 18, unknown 30.0
2224 Female, age 72, unknown 28.9
1944 Female, age 72, unknown 23.5
1817 Female, age 42, unknown 23.4
1815 Male, age 53, unknown 23.3
2007 Male, age 72, unknown 22.3
1816 Male, age 51, unknown 17.6
Red nucleus
nTPM: 31.1
2503 Female, age 72, unknown 48.4
2769 Male, age 72, unknown 41.0
2227 Male, age 72, unknown 40.6
1865 Male, age 51, unknown 40.3
2823 Male, age 76, right hemisphere 34.3
1904 Male, age 53, unknown 31.4
1954 Female, age 42, unknown 29.8
2588 Male, age 74, left hemisphere 28.2
1821 Female, age 72, unknown 25.7
2785 Male, age 18, unknown 25.7
2584 Male, age 75, left hemisphere 24.5
2725 Female, age 75, unknown 3.2
Substantia nigra
nTPM: 35.1
2590 Female, age 75, unknown 102.6
1851 Male, age 51, unknown 34.8
1916 Female, age 42, unknown 33.4
2699 Male, age 18, unknown 29.2
1941 Male, age 53, unknown 28.9
2409 Female, age 72, unknown 28.7
2665 Male, age 74, both hemispheres 27.2
2583 Male, age 75, right hemisphere 27.1
1889 Female, age 72, unknown 23.3
2241 Male, age 72, unknown 15.6
Superior colliculus
nTPM: 28.4
2587 Male, age 74, left hemisphere 36.2
1796 Male, age 53, unknown 35.0
2261 Male, age 18, unknown 31.6
1995 Male, age 72, unknown 31.0
2087 Female, age 72, unknown 29.9
1839 Male, age 51, unknown 26.9
2668 Female, age 75, unknown 24.7
1913 Female, age 42, unknown 24.3
1895 Male, age 76, right hemisphere 23.3
2664 Male, age 75, both hemispheres 20.7
Ventral tegmental area
nTPM: 29.5
2223 Female, age 72, unknown 37.9
1915 Female, age 42, unknown 31.0
1942 Male, age 51, unknown 30.9
2021 Male, age 53, unknown 30.4
2410 Female, age 72, unknown 25.0
2218 Male, age 76, both hemispheres 21.6

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 507.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 507.1
FF:10158-103A5 76 years, female 507.1

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