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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
16.4
nTPM
FANTOM5:
152.2
Scaled Tags Per Million
Mouse:
0.0
nTPM
BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis
BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM
16.4
Sample id
Sample description
nTPM
Caudate nucleus nTPM: 16.4
2481
Female, age 94, left hemisphere
22.8
1781
Male, age 74, unknown
18.9
2846
Female, age 79, unknown
18.3
2289
Male, age 61, right hemisphere
17.1
2290
Female, age 72, unknown
14.5
2288
Male, age 75, left hemisphere
13.5
1854
Male, age 80, left hemisphere
13.3
1857
Female, age 85, left hemisphere
12.5
Globus pallidus, externus nTPM: 13.6
2567
Female, age 72, unknown
15.4
2772
Female, age 79, unknown
15.1
1996
Male, age 80, right hemisphere
13.8
2646
Male, age 61, right hemisphere
13.8
2395
Male, age 75, both hemispheres
9.8
Globus pallidus, internus nTPM: 14.0
2483
Female, age 94, right hemisphere
21.2
2287
Male, age 75, right hemisphere
16.6
2037
Male, age 80, right hemisphere
14.6
2111
Female, age 85, right hemisphere
11.9
1818
Male, age 74, unknown
11.8
2566
Female, age 72, unknown
11.5
2778
Female, age 91, both hemispheres
10.7
Nucleus accumbens nTPM: 15.1
2286
Male, age 75, left hemisphere
20.5
2391
Female, age 94, left hemisphere
17.5
1783
Male, age 74, unknown
16.9
2732
Male, age 80, right hemisphere
15.4
1856
Female, age 91, right hemisphere
15.2
1806
Female, age 85, left hemisphere
15.0
2824
Male, age 61, right hemisphere
11.1
2698
Female, age 72, unknown
9.2
Nucleus basalis of Meynert nTPM: 14.0
2484
Female, age 94, left hemisphere
17.8
2821
Male, age 75, both hemispheres
14.2
2569
Male, age 61, both hemispheres
12.7
2393
Male, age 80, right hemisphere
11.4
Nucleus of the diagonal band nTPM: 13.5
1812
Female, age 91, both hemispheres
16.7
1979
Male, age 74, unknown
16.4
2195
Female, age 85, both hemispheres
16.0
2775
Male, age 80, right hemisphere
9.9
2029
Male, age 61, right hemisphere
8.6
Putamen nTPM: 16.3
2466
Female, age 79, unknown
20.0
2482
Female, age 94, left hemisphere
19.3
1937
Female, age 91, right hemisphere
17.5
1829
Male, age 74, unknown
17.0
1838
Male, age 80, right hemisphere
14.4
2647
Male, age 75, left hemisphere
13.2
2489
Female, age 72, unknown
12.5
Septal nuclei nTPM: 13.0
1960
Male, age 74, unknown
17.1
2059
Female, age 85, both hemispheres
16.6
2031
Female, age 72, unknown
15.9
2009
Female, age 91, both hemispheres
11.3
2199
Male, age 80, right hemisphere
10.4
2629
Female, age 94, right hemisphere
10.4
2394
Male, age 61, left hemisphere
9.5
Stria terminalis, bed nucleus nTPM: 13.9
1974
Female, age 91, both hemispheres
16.2
2201
Male, age 74, unknown
13.4
2486
Female, age 94, both hemispheres
12.3
BASAL GANGLIA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
