Colorectal cancer Colon Adenocarcinoma (COAD)Rectum Adenocarcinoma (READ)

Colorectal cancer

The upper left dot plot(s) shows the consistency between the cancer type related cell lines and their corresponding TCGA disease cohort based on Spearman correlation and normalized enrichment score (NES). In the lower left is a list of the cell lines ranked according to their similarity to the cancer type. By clicking on a cell line in the dot plot or in the ranked list lollipop plots showing the activity of cancer-related pathways inferred using PROGENy and CytoSig cytokines for that particular cell line will be displayed. For more details about the analysis see Methods summary and information about all cell lines can be found here.

Colon Adenocarcinoma (COAD)

Explore the disease cohort in TCGA

Ranking	Cell line	Corr	NES
1	SW1116	0.83	2.24
1	HCC-56	0.83	2.34
3	CL-34	0.82	2.32
4	SW1463	0.83	2.19
5	SNU-C4	0.82	2.27
6	NCI-H684	0.83	2.19
7	CL-14	0.82	2.23
8	NCI-H508	0.82	2.25
8	HT115	0.82	2.2
8	SNU-283	0.83	2.17
11	HT-55	0.82	2.22
12	SW403	0.83	2.14
13	LS180	0.81	2.25
14	LS1034	0.82	2.23
15	HCC1263	0.83	2.14
16	CL-40	0.83	2.11
17	SNU-61	0.82	2.14
18	T84	0.82	2.18
19	SW948	0.82	2.13
19	LS513	0.81	2.2
21	SNU-C1	0.81	2.15
22	RCM-1 [Human rectal	0.81	2.16
22	CW-2	0.82	2.14
24	GP2d	0.8	2.19
25	CCK-81	0.8	2.16
26	SNU-1040	0.81	1.98
26	SK-CO-1	0.81	2.02
28	SNU-1033	0.81	1.99
29	SNU-81	0.81	2.02
30	LS411N	0.81	1.88
31	LoVo	0.81	1.94
32	SW1417	0.8	1.89
33	HT-29	0.8	1.75
34	SNU-407	0.79	1.97
35	COLO 201	0.79	1.88
36	C170	0.8	1.76
37	COLO 206F	0.79	1.83
38	CL-11	0.79	1.71
39	SNU-1197	0.8	1.62
39	SW837	0.8	1.5
41	SNU-175	0.78	1.9
41	KM12	0.79	1.73
43	CACO-2	0.79	1.66
44	C2BBe1	0.78	1.74
45	LS123	0.79	1.51
46	HCA7	0.79	1.38
47	SNU-C5	0.79	1.44
48	SW48	0.79	1.36
49	NCI-H747	0.78	1.39
50	SW620	0.77	1.56
51	NCI-H716	0.74	1.68
52	SW480	0.77	1.35
53	OUMS-23	0.75	1.41
53	HCT 15	0.78	1.23
53	COLO 678	0.78	1.15
56	CaR-1	0.77	1
57	SNU-C2A	0.77	0.93
58	COLO 320	0.72	1.33
59	RKO	0.74	1.09
59	COLO 320DM	0.72	1.29
61	SNU-503	0.75	0.89
61	HCT 116	0.76	0.64
63	MDST8	0.73	0.65

CELL LINE DATA
Cell line	SW1116
Patient:	Male, 73
Disease subtype:	Adenocarcinoma
Primary/metastasis:	Primary
Sample collection site:	Colon
Cellosaurus:	CVCL_0544
PROGENy

CytoSig

Rectum Adenocarcinoma (READ)

Explore the disease cohort in TCGA

Ranking	Cell line	Corr	NES
1	SW1116	0.83	2.33
1	HCC-56	0.83	2.4
3	CL-34	0.82	2.38
4	CL-14	0.83	2.31
5	HT-55	0.82	2.31
6	SW1463	0.84	2.24
7	SNU-283	0.83	2.24
8	SW403	0.84	2.21
8	NCI-H684	0.83	2.23
10	HT115	0.82	2.28
10	NCI-H508	0.82	2.3
12	LS1034	0.82	2.31
13	SNU-C4	0.82	2.26
14	SNU-C1	0.82	2.26
14	RCM-1 [Human rectal	0.82	2.29
16	SNU-61	0.82	2.22
16	HCC1263	0.83	2.19
16	T84	0.82	2.25
19	SW948	0.82	2.22
20	LS180	0.81	2.26
21	CL-40	0.83	2.14
22	CW-2	0.82	2.19
22	LS513	0.81	2.24
24	SNU-1033	0.81	2.17
25	SNU-1040	0.81	2.1
26	SK-CO-1	0.81	2.12
27	GP2d	0.8	2.21
28	SNU-81	0.81	2.04
28	SW1417	0.81	2.07
30	CCK-81	0.8	2.15
31	LS411N	0.81	1.92
32	LoVo	0.81	2.03
33	HT-29	0.8	1.88
34	COLO 201	0.79	2.01
35	SNU-407	0.79	2.02
36	CL-11	0.79	1.9
36	COLO 206F	0.79	1.97
38	C170	0.79	1.82
39	SW837	0.8	1.61
39	SNU-1197	0.8	1.76
41	CACO-2	0.79	1.81
42	C2BBe1	0.78	1.89
43	KM12	0.79	1.68
43	SNU-175	0.78	1.87
45	SW48	0.79	1.52
46	HCA7	0.79	1.39
46	LS123	0.79	1.42
48	SW620	0.77	1.79
49	COLO 678	0.78	1.42
50	SNU-C5	0.78	1.38
50	OUMS-23	0.76	1.68
52	NCI-H716	0.74	1.73
53	NCI-H747	0.78	1.38
54	SW480	0.78	1.4
55	HCT 15	0.78	1.36
56	COLO 320DM	0.72	1.59
56	COLO 320	0.72	1.54
58	CaR-1	0.77	1.26
59	SNU-C2A	0.77	1.05
60	SNU-503	0.75	1.3
61	HCT 116	0.76	0.83
62	RKO	0.74	0.96
62	MDST8	0.73	0.97

CELL LINE DATA
Cell line	SW1116
Patient:	Male, 73
Disease subtype:	Adenocarcinoma
Primary/metastasis:	Primary
Sample collection site:	Colon
Cellosaurus:	CVCL_0544
PROGENy

CytoSig