Kidney cancer Kidney Chromophobe (KICH)Kidney Renal Clear Cell Carcinoma (KIRC)Kidney Renal Papillary Cell Carcinoma (KIRP)

Kidney cancer

The upper left dot plot(s) shows the consistency between the cancer type related cell lines and their corresponding TCGA disease cohort based on Spearman correlation and normalized enrichment score (NES). In the lower left is a list of the cell lines ranked according to their similarity to the cancer type. By clicking on a cell line in the dot plot or in the ranked list lollipop plots showing the activity of cancer-related pathways inferred using PROGENy and CytoSig cytokines for that particular cell line will be displayed. For more details about the analysis see Methods summary and information about all cell lines can be found here.

Kidney Chromophobe (KICH)

Explore the disease cohort in TCGA

Ranking	Cell line	Corr	NES
1	HCC89	0.76	1.31
1	CAL-54	0.76	1.43
3	KMRC-3	0.75	1.31
4	KMRC-20	0.76	1.3
5	SLR21	0.75	1.31
6	TUHR14TKB	0.76	1.19
6	UO-31	0.76	1.17
8	VMRC-RCZ	0.75	1.22
9	SNU-1272	0.75	1.19
9	RCC10RGB	0.74	1.24
11	SNU-349	0.75	1.22
12	Caki-2	0.74	1.22
12	ACHN	0.74	1.26
14	VMRC-RCW	0.75	1.1
14	SLR24	0.74	1.21
16	TUHR10TKB	0.74	1.13
17	TUHR4TKB	0.75	1.02
18	HCC1011	0.74	1.12
18	769-P	0.75	1.08
20	HCC1319	0.74	1.13
21	SK-RC-20	0.74	1.06
22	OS-RC-2	0.74	1.18
23	Caki-1	0.74	1.02
24	TK-10	0.74	1.09
24	SLR26	0.74	1.08
26	A-704	0.71	1.15
27	A-498	0.74	0.97
28	SLR23	0.74	0.93
29	SLR25	0.73	1.08
30	KMRC-2	0.74	0.98
30	UOK101	0.74	0.84
32	BFTC-909	0.74	0.91
33	786-O	0.74	0.73
34	KMRC-1	0.73	0.88
35	G-402	0.7	0.75

CELL LINE DATA
Cell line	HCC89
Patient:
Disease subtype:	Rel Cell Carcinoma
Primary/metastasis:
Sample collection site:
Cellosaurus:	CVCL_V731
PROGENy

CytoSig

Kidney Renal Clear Cell Carcinoma (KIRC)

Explore the disease cohort in TCGA

Ranking	Cell line	Corr	NES
1	HCC89	0.77	2.01
2	TUHR4TKB	0.76	1.95
2	SLR21	0.76	1.99
4	KMRC-3	0.76	1.97
5	SNU-1272	0.76	1.93
6	KMRC-20	0.76	1.9
7	TUHR14TKB	0.76	1.85
7	OS-RC-2	0.75	2.03
9	VMRC-RCZ	0.75	1.9
9	SLR24	0.75	2.02
11	SNU-349	0.75	1.86
12	CAL-54	0.76	1.83
13	RCC10RGB	0.75	1.85
14	HCC1011	0.75	1.89
15	TUHR10TKB	0.75	1.84
16	HCC1319	0.74	1.88
16	VMRC-RCW	0.76	1.72
18	769-P	0.75	1.76
19	SLR26	0.75	1.81
19	UO-31	0.75	1.35
21	KMRC-2	0.74	1.83
22	Caki-2	0.74	1.83
23	SLR23	0.75	1.72
23	SK-RC-20	0.75	1.59
25	Caki-1	0.75	1.69
26	A-498	0.74	1.73
27	A-704	0.72	1.84
28	TK-10	0.73	1.78
29	ACHN	0.74	1.69
30	UOK101	0.74	1.67
31	786-O	0.74	1.61
32	KMRC-1	0.73	1.41
33	SLR25	0.73	1.35
34	BFTC-909	0.73	1.05
35	G-402	0.68	1.14

CELL LINE DATA
Cell line	HCC89
Patient:
Disease subtype:	Rel Cell Carcinoma
Primary/metastasis:
Sample collection site:
Cellosaurus:	CVCL_V731
PROGENy

CytoSig

Kidney Renal Papillary Cell Carcinoma (KIRP)

Explore the disease cohort in TCGA

Ranking	Cell line	Corr	NES
1	SLR21	0.79	2.22
2	CAL-54	0.79	2.17
3	HCC89	0.78	1.95
3	TUHR14TKB	0.78	1.93
5	KMRC-20	0.78	1.94
6	TUHR4TKB	0.78	1.9
6	SLR24	0.77	2.11
6	SNU-1272	0.77	1.96
6	VMRC-RCZ	0.77	2.06
6	769-P	0.77	1.97
11	Caki-2	0.77	2.07
12	ACHN	0.77	1.97
13	KMRC-3	0.78	1.83
13	RCC10RGB	0.77	1.88
15	VMRC-RCW	0.77	1.83
16	SLR23	0.77	1.87
17	TK-10	0.76	1.95
17	UO-31	0.78	1.66
19	OS-RC-2	0.76	1.9
19	SLR26	0.76	1.88
21	Caki-1	0.76	1.84
22	SK-RC-20	0.76	1.7
22	HCC1011	0.76	1.82
24	KMRC-2	0.76	1.78
24	A-498	0.76	1.74
24	UOK101	0.76	1.79
24	A-704	0.74	1.84
28	TUHR10TKB	0.76	1.54
29	SNU-349	0.76	1.56
30	HCC1319	0.75	1.61
31	786-O	0.75	1.57
32	SLR25	0.74	1.41
33	KMRC-1	0.75	1.25
34	BFTC-909	0.74	1.29
35	G-402	0.7	0.9

CELL LINE DATA
Cell line	SLR21
Patient:	Female
Disease subtype:	Renal Cell Carcinoma
Primary/metastasis:	Metastasis
Sample collection site:	Kidney
Cellosaurus:	CVCL_V607
PROGENy

CytoSig